Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G15
         (1122 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   4.2  
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family...    29   5.6  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   5.6  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    29   7.4  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    29   7.4  
At3g20850.1 68416.m02636 proline-rich family protein contains pr...    28   9.8  

>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/59 (30%), Positives = 20/59 (33%)
 Frame = +1

Query: 895  PXRXPLXSLPXXXPXXVPSPPXXXXXTXTXALPXXXXHDPXPSXXPTXXXPXPXHQFPP 1071
            P   P+ S P   P   P PP         + P    H P P   P    P P H  PP
Sbjct: 528  PPPPPVYSPPPPPPVHSPPPPVHSPPPPVHS-PPPPVHSPPP---PVHSPPPPVHSPPP 582


>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
            protein contains proline-rich extensin domains,
            INTERPRO:IPR002965
          Length = 205

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
 Frame = +1

Query: 922  PXXXPXXVPSPPXXXXXTXTXALPXXXXHDPXPSXXP-TXXXPXPXHQFPP 1071
            P   P   P PP           P    H P PS  P     P P H  PP
Sbjct: 36   PPFSPPHHPPPPHFSPPHQPPPSPYPHPHPPPPSPYPHPHQPPPPPHVLPP 86


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 17/63 (26%), Positives = 21/63 (33%)
 Frame = +1

Query: 895  PXRXPLXSLPXXXPXXVPSPPXXXXXTXTXALPXXXXHDPXPSXXPTXXXPXPXHQFPPL 1074
            P   P+ S P   P   P PP       +   P    + P P   P    P      PP+
Sbjct: 458  PPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPV 517

Query: 1075 XSS 1083
             SS
Sbjct: 518  YSS 520


>At3g19430.1 68416.m02464 late embryogenesis abundant protein-related
            / LEA protein-related similar to late embryogenesis
            abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 17/59 (28%), Positives = 21/59 (35%)
 Frame = +1

Query: 895  PXRXPLXSLPXXXPXXVPSPPXXXXXTXTXALPXXXXHDPXPSXXPTXXXPXPXHQFPP 1071
            P   P  S+P   P   P PP     T +   P      P P+  P+   P P    PP
Sbjct: 100  PPPTPTPSVPSPTPPVSPPPPTP---TPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPP 155



 Score = 28.3 bits (60), Expect = 9.8
 Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
 Frame = +1

Query: 895  PXRXPLXSLPXXXPXXVPSP--PXXXXXTXTXALPXXXXHDPXPSXXPTXXXPXPXHQFP 1068
            P   P  S+P   P   P P  P     + T  +P      P P   P    P P    P
Sbjct: 136  PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDPMPSPPPPVSPPPPTPTPSVPSP 195

Query: 1069 P 1071
            P
Sbjct: 196  P 196


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 18/62 (29%), Positives = 20/62 (32%)
 Frame = +1

Query: 886  TYXPXRXPLXSLPXXXPXXVPSPPXXXXXTXTXALPXXXXHDPXPSXXPTXXXPXPXHQF 1065
            T  P   P+ S P   P   P PP         + P      P P   P    P P H  
Sbjct: 636  TTSPQSPPVHSPPPPPPVHSPPPPVFSPPPPMHSPPPPVYSPPPPVHSP---PPPPVHSP 692

Query: 1066 PP 1071
            PP
Sbjct: 693  PP 694


>At3g20850.1 68416.m02636 proline-rich family protein contains
            proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 18/61 (29%), Positives = 20/61 (32%)
 Frame = +1

Query: 889  YXPXRXPLXSLPXXXPXXVPSPPXXXXXTXTXALPXXXXHDPXPSXXPTXXXPXPXHQFP 1068
            Y P   PL S     P  +P PP          LP      P P   P    P P   +P
Sbjct: 36   YQPQHSPLPSPVYSSPADLPPPPTPVYSPPPADLPP----PPTPYYSPPADLPPPTPIYP 91

Query: 1069 P 1071
            P
Sbjct: 92   P 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,739,471
Number of Sequences: 28952
Number of extensions: 63189
Number of successful extensions: 218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2821680336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)