Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G14
         (929 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0630 - 8354628-8355803,8355837-8355926                           30   3.0  
11_06_0513 + 24466131-24469487                                         28   9.2  
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87...    28   9.2  

>04_01_0630 - 8354628-8355803,8355837-8355926
          Length = 421

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 194 LVSIAVSNANILQGTVDINRLQTILKDNLKSKDVG 298
           ++S+ V + NI+  T DIN  +  LK   + KD+G
Sbjct: 76  IISVYVDDLNIIGNTQDINEARHHLKTEFEMKDLG 110


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
 Frame = +2

Query: 182 QLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICE 361
           +L  LVS+ +S   I      I ++ ++   NL   D+G L  ++  L+ L+    + CE
Sbjct: 661 RLQYLVSLNISQTCIATVPDYIGKIHSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCE 720

Query: 362 DLKTIKYDV--------KNLEQVFYLTNLAL-LTNCQNSLKPEVLATPTQALDK 496
            L  +  ++         +LE  +YL+ +   ++N +N  +  VL  P  +LDK
Sbjct: 721 KLTKLPQNIGSVTSLQRLDLEGCYYLSEMPQDISNLKNVKELNVLECP--SLDK 772


>05_01_0128 +
           866817-866859,867789-867874,868142-868231,868337-870214,
           870606-870795,870888-871483
          Length = 960

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 160 FENVLSSTIAHLSEYSSK*CQHSPRHCGYQSPSNHT 267
           F  VLSS  +H  E S+  C     HC ++    H+
Sbjct: 336 FTPVLSSETSHFGEMSTNNCSRPQHHCMHRGRVTHS 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,649,694
Number of Sequences: 37544
Number of extensions: 389267
Number of successful extensions: 774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)