Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_G14
(929 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15) 40 0.002
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.43
SB_33669| Best HMM Match : EMP70 (HMM E-Value=3.9e-11) 29 4.1
SB_8198| Best HMM Match : DUF1430 (HMM E-Value=3.3) 29 4.1
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)
Length = 512
Score = 40.3 bits (90), Expect = 0.002
Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Frame = +2
Query: 200 SIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLKADVP---NICEDLK 370
S+A A++L + RL+ ++ +D+ T +YA++GLK KA +P N+C+ ++
Sbjct: 17 SLAAKPASVLS-VAEQARLRQTFQEAAPFRDLETAHYALKGLKFFKAPMPPNQNVCKFVE 75
Query: 371 TIKYDVKNLEQVFYLTN-LALLTNCQNSLK--PEVLATPTQALDKKDVTIQELYLAVYTL 541
D ++ V++ ++ + +L NCQ +LK ++LA Q + ++ AV +L
Sbjct: 76 D-NVDRSSILSVYHASSIIKVLGNCQLNLKDAEQMLADSIQ----EGAPTSTIFYAVSSL 130
Query: 542 XALG 553
LG
Sbjct: 131 SNLG 134
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 32.7 bits (71), Expect = 0.43
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +2
Query: 761 PVPFPXXLNYPYPXXXTAPXXXXXXS-XXXPXGPXFXPXPXXPVRXRXPXPRXVXPP 928
P P+P N PYP P + P P + P P P P P PP
Sbjct: 176 PPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPPNAPNPP 232
Score = 31.5 bits (68), Expect = 1.0
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +2
Query: 761 PVPFPXXLNYPYPXXXTAPXXXXXXSXXXPXGPXFXPXPXXPVRXRXPXPRXVXPP 928
P P+P N PYP AP P P P P P P P PP
Sbjct: 105 PPPYPPPPNPPYPPPPNAPYPPPPNPPYPP--PPNAPYPPSPNAPYPPPPNPPYPP 158
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +2
Query: 767 PFPXXLNYPYPXXXTAPXXXXXXSXXXPXGPXFXPXPXXPVRXRXPXPRXVXPP 928
P+P N PYP AP + P P P P P P PP
Sbjct: 123 PYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPP 176
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +2
Query: 767 PFPXXLNYPYPXXXTAPXXXXXXSXXXPXGPXFXPXPXXPVRXRXPXPRXVXPP 928
P+P N PYP AP P P P P P P P PP
Sbjct: 131 PYPPPPNAPYPPSPNAPYPPPPNP---PYPPPLYPPPPNPPPPNAPYPPPPYPP 181
>SB_33669| Best HMM Match : EMP70 (HMM E-Value=3.9e-11)
Length = 809
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -2
Query: 355 NVWHISFQLFQSSNSIIQGAHIFAL*VVFKYGLKAIDIHSALENVGITYCYTH*DEQ 185
N WH +F L +++ ++ G IF + + D+ ++N+ +T+CY DE+
Sbjct: 563 NHWHHNFNL-ETNTNLASGQPIFCM-----LNIDVCDVCRIVDNMPVTWCYDVTDEE 613
>SB_8198| Best HMM Match : DUF1430 (HMM E-Value=3.3)
Length = 211
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 458 PEVLATPTQALDKKDVTIQELYLAVYTLXALGKGTIYDXEDALKNLIQ 601
P ++A P+ D D I YLA Y L + + TI+ LIQ
Sbjct: 57 PSIVAQPSSCQDVSDFLIAIEYLAPYKLAKVERNTIFPPRIHTHRLIQ 104
>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -2
Query: 445 LTVCKKGQVCEVKHLL*VLDIILYRFEVLTNVWHISFQLFQSSNSIIQ 302
LT C G+ EV H L ++LY+ +++WH+S +FQ S +Q
Sbjct: 237 LTKCPVGE--EVVHRF-YLSLMLYKLMQGSSMWHVS-SVFQVSRGFVQ 280
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 362 PHKCLAHQLSTVSILEQHNTGCPHLCSLSC 273
P +C L+ + + H GCP +CS SC
Sbjct: 1325 PSECCLTVLTPLKENKSHQEGCPAVCSESC 1354
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 28.3 bits (60), Expect = 9.4
Identities = 30/97 (30%), Positives = 43/97 (44%)
Frame = +2
Query: 182 QLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICE 361
QLL+ V N N LQ +V Q IL L SK G L V L+QL + I
Sbjct: 1031 QLLMDTPSDVENINTLQISVPCP-YQIIL--GLYSK-AGLLSQLVANLEQLSSLNLLIMV 1086
Query: 362 DLKTIKYDVKNLEQVFYLTNLALLTNCQNSLKPEVLA 472
+ ++ +KN+ + L + C N L P++ A
Sbjct: 1087 IIDIVELCLKNISHLISLDQYSAANLCMNVLAPDMAA 1123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,929,443
Number of Sequences: 59808
Number of extensions: 464429
Number of successful extensions: 933
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2705204627
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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