Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G14
         (929 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AF078789-3|AAK68487.1|  295|Caenorhabditis elegans Hypothetical ...    29   6.3  
AF078789-2|AAK21516.1|  318|Caenorhabditis elegans Hypothetical ...    29   6.3  
AC024788-3|AAF60614.2|   98|Caenorhabditis elegans Caenacin (cae...    29   6.3  

>Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical
           protein T26H2.1 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 371 TIKYDVKNLEQVFYLTNL-ALLTNCQNSLKPEVLATPTQ 484
           TI  +  N  QV++  N+ AL + CQNS+ P  L  P +
Sbjct: 82  TISMNFDNSFQVYFYLNIDALESTCQNSIVPLKLGIPNR 120


>AF078789-3|AAK68487.1|  295|Caenorhabditis elegans Hypothetical
           protein Y44E3B.1b protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 257 QTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVK 391
           +T L DN +S D    YY  +  K+  A VPN     K  KY++K
Sbjct: 179 ETSLSDNDESVDDS--YYKPKSSKKTAAAVPNFVPKTKARKYNLK 221


>AF078789-2|AAK21516.1|  318|Caenorhabditis elegans Hypothetical
           protein Y44E3B.1a protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 257 QTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVK 391
           +T L DN +S D    YY  +  K+  A VPN     K  KY++K
Sbjct: 179 ETSLSDNDESVDDS--YYKPKSSKKTAAAVPNFVPKTKARKYNLK 221


>AC024788-3|AAF60614.2|   98|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 6 protein.
          Length = 98

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -2

Query: 928 GGGXXPWXGXXGPNGXXGXWGEXXTXGXXXXXGXGXLWG 812
           G G   W G  G  G  G WG     G     G G  WG
Sbjct: 61  GWGRPMWGGGWGRRGWGGGWGRRGWGGYGGYGGYG--WG 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,998,573
Number of Sequences: 27780
Number of extensions: 360200
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)