Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G10
         (894 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   1.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   4.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   4.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   7.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   7.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.9  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 258 LYGPVESVTQTTHPHTCSR 314
           +YG +E  T+TTHP+   R
Sbjct: 342 IYGVLEEYTRTTHPNEPGR 360


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 210 PRKISLQTLTIRSELVLYGPVESVTQTTHP 299
           P +IS Q    +S   +Y PV ++T  T+P
Sbjct: 333 PYQISAQPTPSQSPNQIYQPVTNLTNLTYP 362


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 777 TKRCCYH*TVPPAAD 821
           ++RCCYH  V P  D
Sbjct: 612 SRRCCYH-AVAPGTD 625


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 777 TKRCCYH*TVPPAAD 821
           ++RCCYH  V P  D
Sbjct: 504 SRRCCYH-AVAPGTD 517


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +2

Query: 497 LNELGQRYTWVQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRIKDRCQS 646
           +N    R   V+   N   +M   +PH   Q   S  +  EP  +D+  S
Sbjct: 6   MNSACMRGGSVRTLNNYQQVMEPRSPHTAWQFGVSQIVKREPMDEDKNDS 55


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 212 PEDQPPDPNNPLRAGALRSSGKRNPDYTS 298
           P+D P D +         S G++N +Y+S
Sbjct: 63  PQDSPYDASVAAACKLYSSEGQQNSNYSS 91


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 266 SSGKRNPDYTSTYV 307
           S G RNP +TS+Y+
Sbjct: 116 SVGSRNPIHTSSYM 129


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 266 SSGKRNPDYTSTYV 307
           S G RNP +TS+Y+
Sbjct: 349 SVGSRNPIHTSSYM 362


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 266 SSGKRNPDYTSTYV 307
           S G RNP +TS+Y+
Sbjct: 349 SVGSRNPIHTSSYM 362


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,045
Number of Sequences: 336
Number of extensions: 4548
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)