Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_G10
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0510 - 3794793-3795047,3796005-3796295,3796850-3796906,379... 50 2e-06
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 34 0.18
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 31 1.2
03_03_0256 + 15898702-15900420 31 1.2
03_06_0039 + 31235840-31236214,31237057-31237674 30 2.2
03_06_0577 - 34842951-34843057,34843472-34843661,34843748-348438... 29 3.8
10_08_0810 + 20734490-20734606,20735182-20735433,20735521-207356... 29 5.0
01_06_1034 + 33962813-33963802 29 5.0
01_01_1174 + 9348256-9349734 29 5.0
03_06_0040 + 31240164-31241102,31241280-31241897 29 6.6
03_06_0037 + 31222963-31223886,31225172-31225786 29 6.6
>07_01_0510 -
3794793-3795047,3796005-3796295,3796850-3796906,
3797021-3797055,3797132-3797172,3798020-3798519
Length = 392
Score = 50.4 bits (115), Expect = 2e-06
Identities = 24/88 (27%), Positives = 45/88 (51%)
Frame = +2
Query: 533 IFENKGAIMGCSNPHPHCQIWASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLK 712
+F+N GA G S H H Q+ + F+P + C E + + G L ++ +++ ++
Sbjct: 212 VFKNHGASAGASMAHSHSQMLGTPFVPPSVTTRLNCMKEVFERLGKCSLCEFQSKDILVR 271
Query: 713 ERIVLKNSEWVAIVPYWAVWPYETMLLP 796
E + AIVP+ A +P+E ++P
Sbjct: 272 E-----THNFSAIVPFAASYPFEIWIIP 294
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 33.9 bits (74), Expect = 0.18
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +2
Query: 164 SPHRCLRPWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNP 286
SP R P Q A PE Q P P NP++AGA SS ++NP
Sbjct: 1947 SPAREPSPNPVQAGAPPEQQNPTPPNPVQAGA--SSEQQNP 1985
>07_03_0537 -
19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 267 PVESVTQTTHPHTCSRMTSQRFSRMCQSLQN 359
P+ES+T+ CSR TSQ FS M + L+N
Sbjct: 355 PIESITKQDAAG-CSRSTSQNFSSMVEDLRN 384
>03_03_0256 + 15898702-15900420
Length = 572
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 134 NPLKDEWVLVSPHRCLRPWSGQTEAAPEDQPPDPNNPLRAGALRSSGK 277
NP DEW+L + PW+G+ EA P + + A A + + K
Sbjct: 178 NPASDEWILRNKQ---SPWAGKKEAPPAELTEEQRQYAEAHAAKKAEK 222
>03_06_0039 + 31235840-31236214,31237057-31237674
Length = 330
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 593 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVD 685
WA S L N P+I + ++E A GNS L++
Sbjct: 141 WAMSLLLNHPKILKKAKAEIDASVGNSRLIN 171
>03_06_0577 -
34842951-34843057,34843472-34843661,34843748-34843829,
34844587-34844768
Length = 186
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 291 THPHTCSRMTSQRFSRMCQSLQNRNTHCSNLHRPK 395
+ P C R + +F C SL+NRN S H+P+
Sbjct: 21 SRPDICKRNSHLKF---CYSLRNRNVFVSKTHKPR 52
>10_08_0810 +
20734490-20734606,20735182-20735433,20735521-20735664,
20735774-20736493,20736955-20737177,20737463-20737523,
20738294-20738615
Length = 612
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 524 WVQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRI 628
+++ E ++ C PHPH ASS + N+ +I
Sbjct: 361 FLRAMEGDECVVNCIEPHPHTMTIASSGIDNDVKI 395
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 176 CLRPWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTSTYVFPND 319
C+ PW Q + P + P P++ R+G+ RSS + + S V +D
Sbjct: 218 CIIPWLVQHNSCPVCRHPLPSSSHRSGSTRSSSTHSNEAISHGVARSD 265
>01_01_1174 + 9348256-9349734
Length = 492
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Frame = +3
Query: 747 R*SRTGRFGLTKRC-----CYH*TVPPAADRLEPA 836
R R G GL+ R C+ VPPAADR EPA
Sbjct: 45 RRERNGHAGLSPRRSLSSPCFSTVVPPAADRAEPA 79
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 593 WASSFLPNEPRIKDRCQSEYYAKYGNSLLV 682
WA S L N P I + Q+E GNS L+
Sbjct: 329 WAMSLLLNHPEILKKAQAEIDMSVGNSRLI 358
>03_06_0037 + 31222963-31223886,31225172-31225786
Length = 512
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 593 WASSFLPNEPRIKDRCQSEYYAKYGNSLLV 682
WA S L N P + Q+E A GNS L+
Sbjct: 324 WAMSLLLNHPETLKKAQAEIDASVGNSRLI 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,804,458
Number of Sequences: 37544
Number of extensions: 520386
Number of successful extensions: 1548
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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