Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G10
         (894 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                     109   4e-24
SB_56327| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.54 
SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)                   31   1.3  
SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)             30   2.2  
SB_44314| Best HMM Match : RnaseH (HMM E-Value=0.49)                   29   5.1  

>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score =  109 bits (261), Expect = 4e-24
 Identities = 50/77 (64%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
 Frame = +2

Query: 98  EFKSTEHQHIRYNPLKDEWVLVSPHRCLRPWSGQTEAAPEDQPP--DPNNPLRAGALRSS 271
           +F  TEHQH RYNPLK EW+LVSPHR  RPW GQ E A E + P  D NNPL     R+S
Sbjct: 525 KFDPTEHQHRRYNPLKGEWILVSPHRMKRPWQGQKEKACEQEVPRWDQNNPLCPRTARAS 584

Query: 272 GKRNPDYTSTYVFPNDF 322
           GK NPDY STYVF NDF
Sbjct: 585 GKENPDYESTYVFENDF 601



 Score = 29.1 bits (62), Expect = 5.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 761 WAVWPYETMLLP 796
           WA WPYE +LLP
Sbjct: 629 WATWPYEVLLLP 640


>SB_56327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 436 HCRIGMKAHNSARSFGRC-RLEQWVFRFWRL---WHILEKRWEVIREHVCGCVVWVTLST 269
           HC +  K  N     GR  +L + + R  +L    H+  + W+++RE  C   V  T++ 
Sbjct: 36  HCMMSCKTRNGKGCIGRLYQLSEELSRVAKLPVGSHVCRRHWDMLREATCAAHVPCTINN 95

Query: 268 GP 263
            P
Sbjct: 96  SP 97


>SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)
          Length = 442

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 797 MVTASFRKAKPPSTGLSPPILNFLTLSSPSILILVSNNRQAESFRILHNIRFGIYP*SWA 618
           +VT  + + +       P   N L  SS  + I++ N   AE+F+I+ N    +Y  SW 
Sbjct: 58  LVTLEYHQNRVGIVRWHPVASNILLSSSHDLKIVIWNLETAEAFQIIENHTAIVYSVSWN 117

Query: 617 R 615
           R
Sbjct: 118 R 118


>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 797 MVTASFRKAKPPSTGLSPPILNFLTLSSPSILILVSNNRQAESFRILHNIRFGIYP*SWA 618
           +VT  + + +       P   N L  SS  + I++ N   AE+F+I+ N    +Y  SW 
Sbjct: 122 LVTLEYHQNRVGIVRWHPVASNILLSSSHDLKIVIWNLETAEAFQIIENHTAIVYSVSWN 181

Query: 617 R 615
           R
Sbjct: 182 R 182


>SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)
          Length = 1060

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 661 IRKLSACRLFETRIKIEGEDSVKKFRMGGDSPVLGGLALRN-DAVTIERCPQRLTDLNPP 837
           ++KLS   LF    K EGE   +K     D+P+L    L N D  T ER     T+LN  
Sbjct: 251 LKKLSG--LFRKHEKSEGESPQRKLSFSFDNPLLVQQGLENIDGSTTERYSD--TELNSN 306

Query: 838 XKKLXRNHEXI 870
              L  +H  +
Sbjct: 307 ENVLIADHNGL 317


>SB_44314| Best HMM Match : RnaseH (HMM E-Value=0.49)
          Length = 317

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 713 ERIVLKNSEWVAIVPYWAVWPYETMLL 793
           ++I ++NSE + IVP W   P+ + LL
Sbjct: 216 QKIAMENSEGLLIVPMWPTQPWYSQLL 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,394,658
Number of Sequences: 59808
Number of extensions: 601643
Number of successful extensions: 1635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)