Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G10
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.53 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.53 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   5.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   8.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 700 FLFQIIDKQRVSVFCIIFAL 641
           ++FQ++D   VS FC++F +
Sbjct: 440 YVFQLLDSYAVSGFCLLFLM 459


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 700 FLFQIIDKQRVSVFCIIFAL 641
           ++FQ++D   VS FC++F +
Sbjct: 493 YVFQLLDSYAVSGFCLLFLM 512


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 589 LTVRMRIRTTHNGTLVF 539
           L+++ ++ TTH+GT +F
Sbjct: 448 LSLKNKVETTHSGTSLF 464


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 397 SFGRCRLEQWVFRFWRLWHILEKRWEVIREHVCGCVVWVTL 275
           +F  C +   V  F  ++ +LE RW    +    C VW +L
Sbjct: 88  AFADCLVGLVVMPFSAIYEVLENRWLFTTD---WCDVWRSL 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,835
Number of Sequences: 438
Number of extensions: 5704
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)