Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G10
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18200.1 68418.m02136 expressed protein                             58   6e-09
At3g13780.1 68416.m01739 expressed protein                             31   0.78 
At5g49700.1 68418.m06153 DNA-binding protein-related contains Pf...    30   2.4  
At1g14490.1 68414.m01718 DNA-binding protein-related contains si...    29   3.1  
At3g47930.1 68416.m05226 L-galactono-1,4-lactone dehydrogenase, ...    29   4.2  
At3g26310.1 68416.m03283 cytochrome P450 family protein contains...    29   4.2  
At2g25160.1 68415.m03009 cytochrome P450, putative similar to cy...    29   4.2  
At1g33600.1 68414.m04159 leucine-rich repeat family protein cont...    29   5.5  
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea...    28   7.3  
At1g68820.1 68414.m07868 membrane protein, putative contains 7 t...    28   9.6  

>At5g18200.1 68418.m02136 expressed protein
          Length = 351

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 19/249 (7%)
 Frame = +2

Query: 107 STEHQ--HIRYNPLKDEWVLVSPHRCLRPWSGQTEAAPEDQPPDPNN-PLRAGALRSSGK 277
           S E+Q   +R +P+ + WV+ SP R  RP   ++++ P++  P P++ P   G  +    
Sbjct: 17  SVENQSPELRKDPVTNRWVIFSPARAKRPTDFKSKS-PQNPNPKPSSCPFCIGREQECAP 75

Query: 278 ---RNPDYTSTYVFPNDFXXXXXXXXXXXXXXXXXFQSAPAKGTCRVMC---FH------ 421
              R PD+      PN                     + P  GT R +    FH      
Sbjct: 76  ELFRVPDHD-----PNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIES 130

Query: 422 PDSTMTIPLMKXXXXXXXXXXWINQLNELGQR--YTWVQIFENKGAIMGCSNPHPHCQIW 595
           P  ++ +  +           +  ++N++ Q     ++Q+F+N+GA  G S  H H Q+ 
Sbjct: 131 PVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMM 190

Query: 596 ASSFLPNEPRIKDRCQ--SEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAV 769
           A   +P  P +  R     +Y+ + G   L      E K K  ++ ++S +V++ P+ A 
Sbjct: 191 ALPVVP--PTVSSRLDGTKDYFEETGKCCLC-----EAKSKHFVIDESSHFVSVAPFAAT 243

Query: 770 WPYETMLLP 796
           +P+E  ++P
Sbjct: 244 YPFEIWIIP 252


>At3g13780.1 68416.m01739 expressed protein
          Length = 309

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 673 SACRLFETRIKIEGEDSVKKFRMGGDSPVLG-GLALRNDAVTIER 804
           S C   ET ++IEGED  K F   G   V G G     + +T+ R
Sbjct: 5   SLCESEETTMEIEGEDGTKLFLKTGVKDVFGRGAGFNTEDLTVSR 49


>At5g49700.1 68418.m06153 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 276

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 794 VTASFRKAKPPSTGLSPPILNFLTLS 717
           V+A+F    PP T LSPP+ NF T+S
Sbjct: 148 VSATFLPP-PPRTSLSPPVSNFFTVS 172


>At1g14490.1 68414.m01718 DNA-binding protein-related contains
           similarity to DNA-binding proteins
          Length = 206

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 794 VTASFRKAKPPSTGLSPPILNFLTLS 717
           V+A+F    PP T LSPP+ NF T+S
Sbjct: 95  VSATFLPPLPP-TSLSPPVSNFFTVS 119


>At3g47930.1 68416.m05226 L-galactono-1,4-lactone dehydrogenase,
           putative strong similarity to L-galactono-1,4-lactone
           dehydrogenase, Brassica oleracea, Z97060 [gi:2760543],
           and gi:3986289 from Ipomea batatas
          Length = 610

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 164 SPHRCLRPWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTSTYVF 310
           SPHR L   +GQT   P   PP P  P  A A  +  ++   Y +  +F
Sbjct: 30  SPHRTLCT-TGQTLTPPPPPPPRPPPPPPATASEAQFRKYAGYAALAIF 77


>At3g26310.1 68416.m03283 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 500

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +2

Query: 593 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVW 772
           WA + L   PR+  + QSE   + GN  ++ +   +     ++V+K +        W + 
Sbjct: 311 WAMTELARNPRVMKKVQSEIRTQMGNRSMISFEDMDQLEYLKMVIKET--------WRLH 362

Query: 773 PYETMLLP 796
           P   +LLP
Sbjct: 363 PTTPLLLP 370


>At2g25160.1 68415.m03009 cytochrome P450, putative similar to
           cytochrome p450(CYP82C1p) GI:2739004 from [Glycine max]
          Length = 527

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 590 IWASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLK 730
           +WA S L N P +  + Q E  +K G   +V    +EL +K+ + L+
Sbjct: 325 VWAVSLLLNNPHVLRKAQEELDSKIGKERVV----EELDIKDLVYLQ 367


>At1g33600.1 68414.m04159 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to
           gi|9294355|dbj|BAB02252 [Arabidopsis thaliana]
          Length = 478

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -2

Query: 827 KSVSRWGHRSMVTASFRKAKPPSTGLSPPILNFLTLS----SPSILILVSNNRQAESFRI 660
           KS+ +    ++    F    PPS     PILN+L LS    S +I   +SN +  +S  +
Sbjct: 219 KSMQKLQSLTLSRNKFSGNLPPSIASLKPILNYLDLSQNNLSGTIPTFLSNFKVLDSLDL 278

Query: 659 LHNIRFGIYP*SWA 618
             N   G+ P S A
Sbjct: 279 SRNRFSGVVPKSLA 292


>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
           family protein contains 6 (3 significant) WD-40 repeats;
            similar to PC326 protein  (GI:200241) (PIR2:S37694)
           [Mus musculus]; Human (H326) mRNA, Homo sapiens,
           gb:U06631
          Length = 496

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 527 VQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRI 628
           +++ E    ++ C  PHPH  + ASS + ++ ++
Sbjct: 369 IRVMEADRHVVNCIEPHPHIPVLASSGIESDIKV 402


>At1g68820.1 68414.m07868 membrane protein, putative contains 7
           transmembrane domains; similar to inhibitor of
           apoptosis-2 IAP-2 (GI:20043383) [Mamestra configurata
           nucleopolyhedrovirus]
          Length = 468

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 223 LIFRGRFRLPAPRSKAPMRRHQYPFVFQRIVPDVLVF 113
           +I RGRF LPAP    P  RH  PF      P ++ F
Sbjct: 58  VIARGRFSLPAP--SMPHDRHWAPFHSVMATPLLVAF 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,885,408
Number of Sequences: 28952
Number of extensions: 409741
Number of successful extensions: 1142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)