Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G09
         (968 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    45   1e-05
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    42   1e-04
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    36   0.011
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    30   0.56 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    29   0.75 
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   5.3  
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    26   6.9  

>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 36/108 (33%), Positives = 41/108 (37%)
 Frame = +3

Query: 153 PLGKIVIELRSXVTPKTCENFRAXXHWREXXSVTXGSIXHRVIPXXMLXXXXXXXXXXXX 332
           PLG+IV +L   V PKT  NFRA     +      GS  HRVIP  ML            
Sbjct: 14  PLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYA-GSTFHRVIPQFML-QGGDFTRGNGT 71

Query: 333 XXNSFXGKXLKXXNLXLXPXGXGVLXXG*XPGXXXXGSXXFITXXXNP 476
              S  G+     N  L     G+L      G    GS  FIT    P
Sbjct: 72  GGKSIYGEKFPDENFALKHNKPGLLSMA-NAGPNTNGSQFFITTVVTP 118


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 34/107 (31%), Positives = 39/107 (36%)
 Frame = +3

Query: 156 LGKIVIELRSXVTPKTCENFRAXXHWREXXSVTXGSIXHRVIPXXMLXXXXXXXXXXXXX 335
           LG++ I L     PKT ENFRA     +      GSI HRVIP  M+             
Sbjct: 40  LGRVTIGLFGKTVPKTAENFRALATGEKGFGY-EGSIFHRVIPNFMI-QGGDITKGDGTG 97

Query: 336 XNSFXGKXLKXXNLXLXPXGXGVLXXG*XPGXXXXGSXXFITXXXNP 476
             S  G      N  L     G+L      G    GS  FIT    P
Sbjct: 98  GKSIYGSRFPDENFKLSHQRPGLLSMA-NAGPDSNGSQFFITTVKTP 143


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = +3

Query: 156 LGKIVIELRSXVTPKTCENFRAXXHWREXXSVTXGSIXHRVIPXXML 296
           LGKI+IEL +   PKTC+NF    +         G I HRVIP  ++
Sbjct: 10  LGKILIELYTEHAPKTCQNF----YTLAKEGYYDGVIFHRVIPDFVI 52


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 156 LGKIVIELRSXVTPKTCENFR 218
           LG+I I L S + PKT ENFR
Sbjct: 18  LGRIKIRLFSSIVPKTAENFR 38


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 135 SLLTXAPLGKIVIELRSXVTPKTCENF 215
           S+L    +G +VI+L     PKTCENF
Sbjct: 2   SVLIETTVGDLVIDLFVKEAPKTCENF 28


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 159 GKIVIELRSXVTPKTCENFRAXXHWREXXSVTXGSIXHRVIPXXML 296
           G I IEL     PK C NF              G+I HRV+P  ++
Sbjct: 22  GDIQIELWCKEVPKACRNFIQLC----LEGYYDGTIVHRVVPEFLI 63


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 30/107 (28%), Positives = 36/107 (33%), Gaps = 3/107 (2%)
 Frame = +3

Query: 165 IVIELRSXVTPKTCENFRAXXHWREXXS---VTXGSIXHRVIPXXMLXXXXXXXXXXXXX 335
           I  EL   V PKT +NF +  +  E         GS  HRVI   ML             
Sbjct: 19  IYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML-QGGDFTRGNGTG 77

Query: 336 XNSFXGKXLKXXNLXLXPXGXGVLXXG*XPGXXXXGSXXFITXXXNP 476
             S  G+  +  N  L      +L      G    GS  FIT    P
Sbjct: 78  GESIYGEKFEDENFELKHDKPFLLSMA-NAGPNTNGSQFFITTVPTP 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,452,891
Number of Sequences: 5004
Number of extensions: 14182
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)