Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G09
         (968 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               45   1e-04
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.46 
SB_26005| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            28   9.9  

>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 48.4 bits (110), Expect = 9e-06
 Identities = 36/103 (34%), Positives = 41/103 (39%)
 Frame = +3

Query: 150 APLGKIVIELRSXVTPKTCENFRAXXHWREXXSVTXGSIXHRVIPXXMLXXXXXXXXXXX 329
           AP G+IV+ELR  V PKT ENFRA     +      GS  HRVIP  M            
Sbjct: 14  APAGRIVMELRDDVVPKTAENFRALCTGEKGFGY-KGSSFHRVIPGFM-CQGGDFTRGDG 71

Query: 330 XXXNSFXGKXLKXXNLXLXPXGXGVLXXG*XPGXXXXGSXXFI 458
               S  G      N  L   G G+L      G    GS  F+
Sbjct: 72  TGGKSIYGAKFADENFNLKHTGPGILSMA-NAGPGTNGSQFFL 113


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 35/101 (34%), Positives = 40/101 (39%)
 Frame = +3

Query: 159 GKIVIELRSXVTPKTCENFRAXXHWREXXSVTXGSIXHRVIPXXMLXXXXXXXXXXXXXX 338
           G+IV+ELRS V P T ENFR      E      GS  HR+IP  M               
Sbjct: 151 GRIVMELRSDVVPMTAENFRCLC-THEKGFGYKGSSFHRIIPQFM-CQGGDFTKHNGTGG 208

Query: 339 NSFXGKXLKXXNLXLXPXGXGVLXXG*XPGXXXXGSXXFIT 461
            S  G   +  N  L   G GVL      G    GS  F+T
Sbjct: 209 KSIYGAKFEDENFVLKHTGAGVLSMA-NSGPNTNGSQFFLT 248


>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 32.7 bits (71), Expect = 0.46
 Identities = 30/103 (29%), Positives = 37/103 (35%)
 Frame = +3

Query: 153 PLGKIVIELRSXVTPKTCENFRAXXHWREXXSVTXGSIXHRVIPXXMLXXXXXXXXXXXX 332
           P G++++ L     PKT  NF A    +E       SI HRVI   M+            
Sbjct: 38  PAGRVILGLFGDTAPKTVANFVALAD-KEQGFGYKDSIFHRVIKNFMIQGGDFTNKDGTG 96

Query: 333 XXNSFXGKXLKXXNLXLXPXGXGVLXXG*XPGXXXXGSXXFIT 461
              S  GK     N  L   G G L      G    GS  +IT
Sbjct: 97  GY-SIYGKYFDDENFNLKHYGPGWLCMA-NAGKNTNGSQFYIT 137


>SB_26005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = -1

Query: 281 DDTMXNGAXXNRXXFSPVXXGTEVFTRLGSDXTSQLNNNFXQWGXRQQ*RSKKTRG 114
           D    N A   R  F+      E F RLG D   +  NNF   G +     ++ +G
Sbjct: 718 DSNKNNAAPNIRGLFTYTPAIQECFRRLGFDVAQETGNNFNASGLQGDWAMRRVKG 773


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 159 GKIVIELRSXVTPKTCENFRAXXHWREXXSVTXGSIXH 272
           G+++ EL +   PKT ENFRA     +    + G   H
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLH 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,658,780
Number of Sequences: 59808
Number of extensions: 121298
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2860128240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)