Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_G08
(936 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep: S... 104 4e-21
UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|R... 94 4e-18
UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30; Eukary... 89 1e-16
UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protei... 87 6e-16
UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4; Magnoli... 81 5e-14
UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2; Tr... 70 7e-11
UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37; Eukary... 69 2e-10
UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n... 59 1e-07
UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=... 58 4e-07
UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n... 51 4e-05
UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, wh... 51 4e-05
UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing... 50 1e-04
UniRef50_UPI00004990C9 Cluster: 40S ribosomal protein S30; n=2; ... 40 0.12
UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiell... 38 0.37
UniRef50_A0RV16 Cluster: Ribosomal protein S30E; n=2; Thermoprot... 36 2.0
>UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep:
S30-ubiquitin-like - Suberites domuncula (Sponge)
Length = 134
Score = 104 bits (249), Expect = 4e-21
Identities = 49/65 (75%), Positives = 54/65 (83%)
Frame = +1
Query: 283 VPLLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRG 462
V ++GGKVHGSLARAGKV+GQTPKVE TGRAKRR+QYNRRFVNVV FGRRRG
Sbjct: 68 VRVVGGKVHGSLARAGKVRGQTPKVEAQEKKKKKTGRAKRRMQYNRRFVNVVAQFGRRRG 127
Query: 463 PNSNS 477
PNSN+
Sbjct: 128 PNSNA 132
>UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|Rep:
40S ribosomal protein S30 - Homo sapiens (Human)
Length = 59
Score = 94.3 bits (224), Expect = 4e-18
Identities = 43/59 (72%), Positives = 49/59 (83%)
Frame = +1
Query: 301 KVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 477
KVHGSLARAGKV+GQTPKV TGRAKRR+QYNRRFVNVV TFG+++GPN+NS
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30;
Eukaryota|Rep: 40S ribosomal protein S30 - Oryzias
latipes (Medaka fish) (Japanese ricefish)
Length = 59
Score = 89.0 bits (211), Expect = 1e-16
Identities = 41/59 (69%), Positives = 47/59 (79%)
Frame = +1
Query: 301 KVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 477
KVHGSLARAGKV+GQTP V+ GRAKRRIQYNRRFVNVV TFG+++G N+NS
Sbjct: 1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59
>UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protein
30; n=3; Caenorhabditis|Rep: Ribosomal protein, small
subunit protein 30 - Caenorhabditis elegans
Length = 130
Score = 87.0 bits (206), Expect = 6e-16
Identities = 41/63 (65%), Positives = 47/63 (74%)
Frame = +1
Query: 289 LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPN 468
LLGGKVHGSLARAGKV+ QTPKV+ GRA RR+QY RR+VNV G++RGPN
Sbjct: 68 LLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPN 127
Query: 469 SNS 477
SNS
Sbjct: 128 SNS 130
>UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4;
Magnoliophyta|Rep: 40S ribosomal protein S30 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 62
Score = 80.6 bits (190), Expect = 5e-14
Identities = 37/59 (62%), Positives = 44/59 (74%)
Frame = +1
Query: 298 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPNSN 474
GKVHGSLARAGKV+GQTPKV GRA +R+Q+NRRFV V FG++RGPNS+
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
>UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2;
Trichocomaceae|Rep: Ribosomal S30/ubiquitin fusion -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 78
Score = 70.1 bits (164), Expect = 7e-11
Identities = 37/64 (57%), Positives = 42/64 (65%)
Frame = +1
Query: 298 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 477
GKVHGSLARAGKVK TPKVE GRA +R++Y RRFVNV T G+R+ SN
Sbjct: 2 GKVHGSLARAGKVKSATPKVEKQEKKKEPKGRALKRLKYTRRFVNVTMTGGKRK-VRSNP 60
Query: 478 *IYK 489
YK
Sbjct: 61 ARYK 64
>UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37;
Eukaryota|Rep: 40S ribosomal protein S30 -
Schizosaccharomyces pombe (Fission yeast)
Length = 61
Score = 68.9 bits (161), Expect = 2e-10
Identities = 35/60 (58%), Positives = 39/60 (65%)
Frame = +1
Query: 298 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 477
GKVHGSLARAGKVK QTPKVE GRA +R+ Y RRFVNV G +R N +S
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n=3;
Laurasiatheria|Rep: UPI0000F33F66 UniRef100 entry - Bos
Taurus
Length = 128
Score = 59.3 bits (137), Expect = 1e-07
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +1
Query: 289 LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPN 468
+LGGKVHGSL AGKV+GQTPKV+ G+AKR YN FV VV +++G N
Sbjct: 68 MLGGKVHGSLDCAGKVRGQTPKVDKESKRRW--GQAKRGTYYNPCFVKVVPHLKKKKGTN 125
Query: 469 SNS 477
+S
Sbjct: 126 VSS 128
>UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=4;
Leishmania|Rep: 40S ribosomal protein S30, putative -
Leishmania major
Length = 66
Score = 57.6 bits (133), Expect = 4e-07
Identities = 26/45 (57%), Positives = 32/45 (71%)
Frame = +1
Query: 298 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVN 432
GK+HGSLARAGKVK QTPKV GRA +R++Y RRF++
Sbjct: 2 GKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLS 46
>UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB4B7C UniRef100
entry - Canis familiaris
Length = 104
Score = 51.2 bits (117), Expect = 4e-05
Identities = 29/56 (51%), Positives = 34/56 (60%)
Frame = +1
Query: 310 GSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 477
G A GKV+GQ PKV TGRAKR IQY+ FV VV TFG ++ N+NS
Sbjct: 50 GVEAPHGKVRGQAPKVAKQEKQKKKTGRAKRWIQYHWHFVTVVPTFG-KKDLNTNS 104
>UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_22,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 92
Score = 51.2 bits (117), Expect = 4e-05
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Frame = +1
Query: 298 GKVHGSLARAGKVKGQTPKVE-XXXXXXXXTGRAKRRIQYNRRFVNVVQTFG----RRRG 462
GK+HG+LA+AGKV+ QTPK+E GRA +RI +NRRF + +R+G
Sbjct: 2 GKLHGTLAKAGKVRKQTPKIEKQVRRHKIPKGRAYKRICFNRRFGSAAAAGAGPQQKRKG 61
Query: 463 PN 468
PN
Sbjct: 62 PN 63
>UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal protein S30 containing protein - Tetrahymena
thermophila SB210
Length = 80
Score = 49.6 bits (113), Expect = 1e-04
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Frame = +1
Query: 298 GKVHGSLARAGKVKGQTPKVE-XXXXXXXXTGRAKRRIQYNRRFV-NVVQTF-GRRRGPN 468
G++HG+LA+AGKV+ QTPKVE GR+ +RI YNRR+ +++ T +R+ PN
Sbjct: 2 GRMHGTLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPN 61
>UniRef50_UPI00004990C9 Cluster: 40S ribosomal protein S30; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S30 - Entamoeba histolytica HM-1:IMSS
Length = 64
Score = 39.5 bits (88), Expect = 0.12
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 298 GKVHGSLARAGKVKGQTPKVE--XXXXXXXXTGRAKRRIQYNRRFV 429
GKVHG L RAGKV+ QT K E +GRA R Y++R V
Sbjct: 2 GKVHGGLTRAGKVRNQTKKPEKVDTGKKKFPSGRAYLRYLYSKRMV 47
>UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiella
natans|Rep: Ribosomal protein S30 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 55
Score = 37.9 bits (84), Expect = 0.37
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +1
Query: 298 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRR 405
GKVHGSL RAGKV+ QT + +GRA+ R
Sbjct: 2 GKVHGSLTRAGKVRNQTKFIAKSDKKVKNSGRARYR 37
>UniRef50_A0RV16 Cluster: Ribosomal protein S30E; n=2;
Thermoprotei|Rep: Ribosomal protein S30E - Cenarchaeum
symbiosum
Length = 60
Score = 35.5 bits (78), Expect = 2.0
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 307 HGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFV 429
HGSL +AGKV+ QTPK+E + R Y +R V
Sbjct: 4 HGSLTKAGKVRSQTPKIE-GRKKTGTNASVQNRSNYRKRLV 43
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 348,970,226
Number of Sequences: 1657284
Number of extensions: 4135907
Number of successful extensions: 9902
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9898
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85732778670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -