Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G07
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    30   0.39 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    29   1.2  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    27   4.8  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   4.8  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 293 AIAGPALINPSRTXRPTXSIFLKSFHLGSGAALTAP 186
           AIA P +I+P  + RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 410 LNSLKLEIHNYLQSCFKLXASLEFNDKVY 324
           L  L LEI N+ Q+   L  +LE+ +KVY
Sbjct: 205 LGELSLEIENFSQASQDLKTALEWKEKVY 233


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 691 NFLNIHSNKTYNVKLKDEL 635
           NF++ H NK Y + L DEL
Sbjct: 233 NFMDKHLNKPYEINLMDEL 251


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 745 LXLKIRYRYTQKKKNENLNFLNIHSNKTYNVKLKD 641
           L   I+Y + Q   + +L   NI  +K YNVKL D
Sbjct: 132 LCCAIQYLHRQGCVHRDLKLENIFLDKAYNVKLGD 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,174
Number of Sequences: 5004
Number of extensions: 38038
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)