Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G07
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   5.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   5.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.7  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 736 KIRYRYTQKKKNENLNFLNIHSNKTYNVKLKDELYKN 626
           KI    +   K  N N  N ++N  YN   K   YKN
Sbjct: 313 KIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKN 349


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = -1

Query: 730 RYRYTQKKKNENLNFLNIHSNKTYNVKLKDELYKNXXXXXXXXXIYYHNIXKLHY 566
           R R  + K   +L+   IH+N  Y     +  Y N          Y +N  KL+Y
Sbjct: 306 RERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNN----NNYNNNYNNNCKKLYY 356


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 730 RYRYTQKKKNENLNFLNIHSNKTYNVKLKDELYKNXXXXXXXXXIYYHNIXKLHY 566
           R R  + K   +L+   IH+N  YN    +  Y N           Y+N  KL+Y
Sbjct: 306 RERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNN------YNNYKKLYY 354


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 730 RYRYTQKKKNENLNFLNIHSNKTYNVKLKDELYKN 626
           R R  + K   +L+   IH+N  YN     +LY N
Sbjct: 295 RERSKEPKIISSLSNKTIHNNNNYNNYNNKKLYYN 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,784
Number of Sequences: 438
Number of extensions: 3110
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)