Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G05
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21820.1 68417.m03156 calmodulin-binding family protein conta...    30   2.4  
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r...    29   5.4  
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    28   9.5  
At3g29638.1 68416.m03731 expressed protein ; expression supporte...    28   9.5  

>At4g21820.1 68417.m03156 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 1088

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 213 LVNVVEKRQNLLLLFDERSVNRCCFEFRYGATESEGNKP 97
           L NV+ KR  LL+L  +R+ ++ C   +YG    +G  P
Sbjct: 337 LGNVILKRILLLVLVIDRAKSQSCLSLKYGIDGIDGGSP 375


>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1086

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 563 LNILSTWKLKIKWTTLR*WMVALTRKYVIITELSKXTNNS*C 688
           L ++S W+LKI   ++R WM+    K++   E+S+ T  + C
Sbjct: 331 LLLVSFWELKILSCSIRDWMMQFPVKHLAQFEVSEHTLTTEC 372


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 259 IEASKDCYTNMKAYENFMMMYKVGFLPKNLEFS 357
           I  +K C    KA E F  MYK G +P  + +S
Sbjct: 228 ITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYS 260


>At3g29638.1 68416.m03731 expressed protein ; expression supported
           by MPSS
          Length = 412

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = +1

Query: 601 DYVKMMDGCLDEKICYNYGIIKXNEQFVMYANYSNSLTYPNXEDRIAYLTEDVGLXAYY 777
           +++K +   L E +CY +G +K     V    Y N         R+     D+   A+Y
Sbjct: 135 EHIKRVKEGLFELLCYTFGDLKLKIDDVRGQGYDNGSNIKGKHKRVQKRLLDINSIAFY 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,502,595
Number of Sequences: 28952
Number of extensions: 281022
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)