Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G04
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    35   0.089
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    35   0.089
AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    35   0.089
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 98  WPTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSL 256
           WP   ET     TT  T+  +P TTT+  T T  +T    T T   A  T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 98  WPTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSL 256
           WP   ET     TT  T+  +P TTT+  T T  +T    T T   A  T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350


>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 86  LCWLWPTLKETATNLLTTARTSLILPKTTT---LMETATNLSTTVHITWTLPKADLTSSL 256
           LC+LW  L  T T   TT  T+  +  TTT   +  T T    T   T T+P    T+++
Sbjct: 179 LCYLWVPLTTTTTTTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVPLNGTTTTV 238

Query: 257 P 259
           P
Sbjct: 239 P 239


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 104 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLP 232
           T   T T   TT+ T+   P TTT     T  STT   T T P
Sbjct: 60  TTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTP 102


>Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical
           protein F33E2.7 protein.
          Length = 174

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 104 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS-SLPLSLV 271
           T   T T   TT  T+   P TTT   T T  +TT   T T P    T+ S PL+ V
Sbjct: 90  TTTTTPTTTTTTPTTTTTTPTTTTTTPTTT--TTTPTTTTTTPTTTTTTRSTPLTEV 144


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 116 TATNLLTTARTSLILPKTTTLMETATNLSTTVHIT--WTLPKADLTSSLP 259
           T T   TT  T+   P TTT   T T  +TT+  T   T P    T++ P
Sbjct: 304 TETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTTTPTTTATTTKP 353


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 104 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSL 256
           T ++  T+  TT  ++  +P TTT  E AT    T   T  LPK  L   L
Sbjct: 118 TTQKPTTSTTTTTTSTTPVPTTTTTTEAATTTVLTT-TTEELPKQQLAGRL 167



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +2

Query: 110 KETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAVGSK 289
           KET T+L T        PKTTT++ ++T  ST   +T    +A  T++ P + V    +K
Sbjct: 442 KETTTSLATEQ------PKTTTIVASSTETST---VTTDATEATTTTTAPTTTVATTTTK 492

Query: 290 E 292
           +
Sbjct: 493 K 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,275,116
Number of Sequences: 27780
Number of extensions: 282973
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)