Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G02
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           36   0.044
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     31   1.7  
12_02_1188 + 26801833-26802225                                         30   2.9  
03_06_0149 - 31987183-31987630,31987813-31987874                       30   2.9  
07_01_1201 - 11419851-11419913,11420090-11420311                       28   8.8  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 729 RKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETPG 622
           R R   RR  GG+V+G+   R+RR   GA +GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 650 RELXRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 522
           R L RGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 22  RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 699 GGQVSGKRQGRNRRAHEGAXQGETPGIFIVLSG 601
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 735 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETP 625
           A+ + H   R +   +  +R+GR R AHEG   G  P
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 588 QRWRN--PTGL*RYQAFPPGKLPRALSCSDPXAYRIP 692
           Q+WR+  PTG   + +FP G LP A     P   R P
Sbjct: 27  QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,469,795
Number of Sequences: 37544
Number of extensions: 374414
Number of successful extensions: 1019
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)