Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F24
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.6  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 627 CTRNQRICTMKLLCPTCHYC 686
           CT+NQ+   +++    C YC
Sbjct: 55  CTKNQQCSILRINRNRCQYC 74


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 627 CTRNQRICTMKLLCPTCHYC 686
           CT+NQ+   +++    C YC
Sbjct: 104 CTKNQQCSILRINRNRCQYC 123


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 190 SKTXF*IINMSHSKISVKSKY 252
           + T + I++MSHS+ ++ SK+
Sbjct: 204 NNTEWEIVHMSHSESTIDSKF 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,579
Number of Sequences: 438
Number of extensions: 2686
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)