Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F24
         (900 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27325.1 68416.m03415 expressed protein                             30   1.8  
At4g05400.1 68417.m00822 expressed protein                             28   7.3  

>At3g27325.1 68416.m03415 expressed protein
          Length = 1048

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 626 LYEESEDLYNEAIMPDLPLLPYTISGPVATPPIKDYESPDGEYXDVSK 769
           L E+    YN +    L LLP T+S       IK +  PDGE  D+ K
Sbjct: 595 LKEDHPLAYNLSFSTSLGLLPATLSLKTTGCGIKTFGLPDGETGDLDK 642


>At4g05400.1 68417.m00822 expressed protein
          Length = 250

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/74 (27%), Positives = 32/74 (43%)
 Frame = +2

Query: 512 EARELLQKEWARYKRDXYMNNXAQVDRIXAAQRRALDRLYEESEDLYNEAIMPDLPLLPY 691
           E  E L KE+++     +    A    +   ++ A++ L    E+L   A+ PDL   P 
Sbjct: 162 EDGERLAKEYSKVLMREHRERRAAETALLNLKKSAIEAL---PENLKKAALEPDLTPFPA 218

Query: 692 TISGPVATPPIKDY 733
                  TPPI+ Y
Sbjct: 219 NRGMATLTPPIEGY 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,226
Number of Sequences: 28952
Number of extensions: 194681
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)