Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F21
         (919 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56690.1 68418.m07076 F-box family protein contains F-box dom...    30   2.5  
At2g44890.1 68415.m05588 cytochrome P450 family protein contains...    29   5.7  
At5g63450.1 68418.m07965 cytochrome P450, putative                     28   10.0 

>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 554 NNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQWYLQPAKYDNDVLFYIY 733
           N+K ++K    +  +YL +    N       F +NS+++FR +WY    + D D L  I+
Sbjct: 333 NSKSFYK---EKIGEYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388


>At2g44890.1 68415.m05588 cytochrome P450 family protein contains
           Pfam PF00067: Cytochrome P450; similar to  Cytochrome
           P450 86A2 (SP:O23066) [Arabidopsis thaliana]
          Length = 505

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
 Frame = +2

Query: 500 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRA 679
           GKD T+  +SW L  L +N  V  KI+   R+        T+ NG    F  +  +   A
Sbjct: 300 GKDTTAASLSWFLYMLCKNPLVQEKIVQEIRDVTSSHEKTTDVNG----FIESVTEEALA 355

Query: 680 QWYLQPAKYDNDVLFYIYNREYSKALTLSRTVXPSGHRMAWG----YXGRVIGKSEHYAW 847
           Q     A     +  Y    E+ +    +  V P GHR++ G    Y    +G+   Y W
Sbjct: 356 QMQYLHAALSETMRLYPPVPEHMRCAE-NDDVLPDGHRVSKGDNIYYISYAMGRMT-YIW 413

Query: 848 G 850
           G
Sbjct: 414 G 414


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 500 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVG 619
           G+D TS  ++W    L +N+ V  KIL+  RN+   LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,647,453
Number of Sequences: 28952
Number of extensions: 272640
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)