Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_F20
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 83 7e-17
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 81 2e-16
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 77 3e-15
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.53
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 28 2.1
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 28 2.1
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 3.7
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.9
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 4.9
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 6.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.5
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 82.6 bits (195), Expect = 7e-17
Identities = 35/68 (51%), Positives = 55/68 (80%)
Frame = +1
Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
+Y+AA L +GGK P+A+ +E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG E
Sbjct: 2 KYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEK 61
Query: 289 LSSMPVGG 312
L+++P GG
Sbjct: 62 LATVPTGG 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 81.4 bits (192), Expect = 2e-16
Identities = 36/68 (52%), Positives = 55/68 (80%)
Frame = +1
Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
+Y+AA L +GGK P+A+ +E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG E
Sbjct: 2 KYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEK 61
Query: 289 LSSMPVGG 312
LS++P G
Sbjct: 62 LSTVPSAG 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 77.4 bits (182), Expect = 3e-15
Identities = 33/68 (48%), Positives = 55/68 (80%)
Frame = +1
Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
+Y+AA L +GGK P+A+ +E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG E
Sbjct: 2 KYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEK 61
Query: 289 LSSMPVGG 312
L+++P GG
Sbjct: 62 LATVPSGG 69
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.53
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Frame = -2
Query: 311 PPTGIDDSXSRPAA------ISCSTSLPLSSVITCLSCSASASIPTELRSC--STXAAAG 156
PPTG S S P + STS+P+ T + + S+ +PT SC ST G
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTG 238
Query: 155 GGLPPST 135
G ST
Sbjct: 239 GSSSLST 245
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = -2
Query: 311 PPTGIDDSXSRPAA------ISCSTSLPLSSVITCLSCSASASIPTELRSCSTXAAAGGG 150
PPTG S S P + STS+P+ T + + S +PT SC+T +
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTS---- 177
Query: 149 LPPSTARKDAAT 114
+PP+ +T
Sbjct: 178 IPPTGGSSSLST 189
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 278 PAAISCSTSLPLSSVITCLSCSASASIPTELRSCST 171
P + STS+P+ T + + S+ +PT SC+T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTT 287
Score = 25.8 bits (54), Expect = 8.6
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 290 SXSRPAAISCSTSLPLSSVITCLSCSASASIPTELRSCSTXAAAGGGLPPST 135
S + A+ + S+S PL S T SC+ S SIP S S +PP++
Sbjct: 93 SSTSSASTTGSSSSPLPSTST--SCTTSTSIPPTGGSSSLSTPITPTVPPTS 142
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 311 PPTGIDDSXSRPAAISCSTSLPLSSVI--TCLSCSASASIP 195
PPT + + P S S++ SS + T SC+ S SIP
Sbjct: 306 PPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 311 PPTGIDDSXSRPAAISCSTSLPLSSVI--TCLSCSASASIP 195
PPT + + P S S++ SS + T SC+ S SIP
Sbjct: 360 PPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIP 400
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 311 PPTGIDDSXSRPAAISCSTSLPLSSVITCLSCSASASIP 195
PPTG + P S+S PL T +C+ S S+P
Sbjct: 400 PPTGNSTTPVTPTVPPTSSSTPL----TTTNCTTSTSVP 434
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 260 STSLPLSSVITCLSCSASASIPTELRSCSTXAAAGGGLPPSTARKDAAT 114
S S +SSV+ + S S IP+ + S + +A P ST+ + T
Sbjct: 201 SASATISSVVDSATSSVSTVIPSSIISAAPPDSASESTPASTSYASSTT 249
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 308 PTGIDDSXSRPAAISCSTSLPLSSVITCLSCSASASIPTELRSC 177
PT S AI+ S + PL V T L S+SIP E+R C
Sbjct: 204 PTSHIISGGLSGAIASSLTTPLDVVKTLLQTRGSSSIP-EVRKC 246
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 136 VLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREXLSSM 300
V+ +PP + + EQ+L SV +D Q+IT N + V++L++ R L +
Sbjct: 740 VIPMRPPSSLSEFEQILKSVLYVSDEGGKDQIITCWNQR-VDELLSDTRSHLHKL 793
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 242 SSVITCLSCSASASIPTELRS--CSTXAAAGGGLPPSTA 132
SSV T LS SAS+SIP S ST ++ +P S++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSS 46
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 160 AAAXVEQLLSSVGIEADAEQLKQVITELNG 249
A V+++ VG+E D+E K + E+ G
Sbjct: 1738 AQIFVDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 284 SRPAAISCSTSLPLSSVITCLSCSASASIPTELRS 180
S P+A+S +TS+P S+ + +S S S S T L S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSLSS 171
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 6.5
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 314 PPPTGIDDSXSRPAAISCSTSLPLSSVITCLSCSASASIPTELRSC-STXAAAGGGLPPS 138
P T + + S A + ST PL+SV + + SAS++ + + S ST A + P S
Sbjct: 287 PSSTPLSSANSTTATSASST--PLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLS 344
Query: 137 TARKDAAT 114
+ AT
Sbjct: 345 SVNSTTAT 352
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = -2
Query: 311 PPTGIDDSXSRPAAISCSTSLPLSSVITCLSCSASASIPTELRSCSTXAAAGGGLPPSTA 132
P + + + S A + ST PLSSV + + SAS++ T + ST A + P ++
Sbjct: 323 PLSSVSSANSTTATSTSST--PLSSVNSTTATSASSTPLTSVN--STTATSASSTPLTSV 378
Query: 131 RKDAAT 114
+AT
Sbjct: 379 NSTSAT 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,636,670
Number of Sequences: 5004
Number of extensions: 19080
Number of successful extensions: 78
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -