Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F20
         (915 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               75   1e-13
SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)                 31   1.3  
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)        30   3.0  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 34/68 (50%), Positives = 50/68 (73%)
 Frame = +1

Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
           RYVAA  LA LG    P+A  ++ +L SVGIE+D E+L +VI+EL+GK V+++I AG+  
Sbjct: 651 RYVAAYLLATLGNNKNPSAKDIKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKSK 710

Query: 289 LSSMPVGG 312
           L+++P GG
Sbjct: 711 LATVPTGG 718


>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 826

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 97  PXKXRYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEAD 210
           P + R VA     V+GGK PP    VE  + SVG+  D
Sbjct: 770 PCQGRIVADDITGVIGGKAPPCQGKVE-AVGSVGVIGD 806


>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
          Length = 432

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 281 RPAAISCSTSLPLSSVITCLSCSASASIPTELRSCST 171
           +P  +SCS    LS+ ++C S + S ++  +L++ ST
Sbjct: 304 QPLVVSCSYLKALSTTVSCQSKALSTTVSCQLKALST 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,482,283
Number of Sequences: 59808
Number of extensions: 166965
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)