Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F20
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    66   4e-11
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    58   7e-09
AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical...    30   2.7  
AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical...    30   2.7  
AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding p...    30   2.7  
AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding p...    30   2.7  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 42/111 (37%), Positives = 52/111 (46%)
 Frame = +1

Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
           RYV+A  LAVLGG   P    ++ +LS+VG++ADAE  K V++ L GK VE+LIA G   
Sbjct: 2   RYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAG 61

Query: 289 LSSMPVGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 441
           L S  V GG                                   MGFGLFD
Sbjct: 62  LVS--VSGGAAPAAAAAPAAGGAAPAADSKPAKKEEPKEESDDDMGFGLFD 110


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 27/68 (39%), Positives = 41/68 (60%)
 Frame = +1

Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
           +Y+ A  LA LGG   P+A  V ++L + G++ D E    V+  L GK + ++IA G+  
Sbjct: 2   KYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVK 61

Query: 289 LSSMPVGG 312
           LSS+P GG
Sbjct: 62  LSSVPSGG 69


>AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35b protein.
          Length = 463

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 263 CSTSLPLSSVITCLSCSASASIPTELRSCSTXAAAGGG 150
           C TS P+S   T +  +A+A  PT  R  ST +   GG
Sbjct: 195 CCTSGPISPAYTPIGNNANACAPTRSRRTSTASNKSGG 232


>AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35a protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 263 CSTSLPLSSVITCLSCSASASIPTELRSCSTXAAAGGG 150
           C TS P+S   T +  +A+A  PT  R  ST +   GG
Sbjct: 212 CCTSGPISPAYTPIGNNANACAPTRSRRTSTASNKSGG 249


>AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 263 CSTSLPLSSVITCLSCSASASIPTELRSCSTXAAAGGG 150
           C TS P+S   T +  +A+A  PT  R  ST +   GG
Sbjct: 212 CCTSGPISPAYTPIGNNANACAPTRSRRTSTASNKSGG 249


>AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 463

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 263 CSTSLPLSSVITCLSCSASASIPTELRSCSTXAAAGGG 150
           C TS P+S   T +  +A+A  PT  R  ST +   GG
Sbjct: 195 CCTSGPISPAYTPIGNNANACAPTRSRRTSTASNKSGG 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,698,449
Number of Sequences: 27780
Number of extensions: 121999
Number of successful extensions: 509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)