Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_F20
(915 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 73 3e-13
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 73 3e-13
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 73 3e-13
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 71 8e-13
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 71 1e-12
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 71 1e-12
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 55 6e-08
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 54 2e-07
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 31 0.81
At1g48450.1 68414.m05416 expressed protein 31 1.1
At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS cla... 28 7.5
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui... 28 9.9
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 72.9 bits (171), Expect = 3e-13
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = +1
Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
+ VAA LAVL GK P +A ++ +L SVG E + Q++ ++ E+ GKD+ +LIAAGRE
Sbjct: 2 KVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREK 61
Query: 289 LSSMPVGGG 315
L+S+P GGG
Sbjct: 62 LASVPSGGG 70
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 72.9 bits (171), Expect = 3e-13
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = +1
Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
+ VAA LAVL GK P +A ++ +L SVG E + Q++ ++ E+ GKD+ +LIAAGRE
Sbjct: 2 KVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREK 61
Query: 289 LSSMPVGGG 315
L+S+P GGG
Sbjct: 62 LASVPSGGG 70
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 72.9 bits (171), Expect = 3e-13
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = +1
Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
+ VAA LAVL GK P +A ++ +L SVG E + Q++ ++ E+ GKD+ +LIAAGRE
Sbjct: 2 KVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREK 61
Query: 289 LSSMPVGGG 315
L+S+P GGG
Sbjct: 62 LASVPSGGG 70
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 71.3 bits (167), Expect = 8e-13
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = +1
Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
+ VAA LAVL GK P ++ +L SVG E + Q++ ++ E+ GKD+ +LIAAGRE
Sbjct: 2 KVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREK 61
Query: 289 LSSMPVGGG 315
L+S+P GGG
Sbjct: 62 LASVPSGGG 70
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/68 (47%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Frame = +1
Query: 115 VAASFL-AVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREXL 291
VAA+FL AVLGG P+A ++ ++ +VG + D E ++ ++ E++GKD+ +LIA+GRE L
Sbjct: 3 VAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62
Query: 292 SSMPVGGG 315
+S+P GGG
Sbjct: 63 ASVPSGGG 70
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/68 (47%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Frame = +1
Query: 115 VAASFL-AVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREXL 291
VAA+FL AVLGG P+A ++ ++ +VG + D E ++ ++ E++GKD+ +LIA+GRE L
Sbjct: 3 VAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62
Query: 292 SSMPVGGG 315
+S+P GGG
Sbjct: 63 ASVPSGGG 70
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 55.2 bits (127), Expect = 6e-08
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +1
Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
+ VAA LA L G P+ A +++++ SVG E D E++ + + +DV +LIA GRE
Sbjct: 2 KVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREK 61
Query: 289 LSSMPVGGG 315
++++ GGG
Sbjct: 62 MAALSSGGG 70
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 53.6 bits (123), Expect = 2e-07
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = +1
Query: 109 RYVAASFLAVLGGKPPPAAAXVEQLLSSVGIEADAEQLKQVITELNGKDVEQLIAAGREX 288
+ +AA LA LGG P + ++++L SVG E D ++ + + + DV +LIAAGRE
Sbjct: 2 KVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREK 61
Query: 289 LSSMPVGG 312
+S++ GG
Sbjct: 62 MSALSSGG 69
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 31.5 bits (68), Expect = 0.81
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 175 EQLLSSVGIEADAEQLKQVITELNGKDVE----QLIAAGREXLSSMP 303
E+LL G+E +K+++TE NG+ +E +L+A+G+ L P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At1g48450.1 68414.m05416 expressed protein
Length = 423
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 43 TFAXARSSFGIPRFVSIRPXKXRYVAASFLA-VLGGKPPPAAAXVEQLLSSVGIEADAEQ 219
+F S+ G SI P + + FL+ +L P A VEQ L + I+ DAE+
Sbjct: 67 SFVVKASASGDASTESIAPLQLKSPVGQFLSQILVSHPHLVPAAVEQQLEQLQIDRDAEE 126
Query: 220 LKQVITELNGKDV 258
+ + + G D+
Sbjct: 127 QSKDASSVLGTDI 139
>At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 703
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -2
Query: 311 PPTGIDDSXSRPAAISCSTSLPLSSVI--TCLSCSAS 207
PP+ + S S P+ +S STS P SS + LSC+ +
Sbjct: 43 PPSSLASSTSPPSTLSSSTSHPSSSTSPPSSLSCTGT 79
>At5g02880.1 68418.m00231 HECT-domain-containing protein /
ubiquitin-transferase family protein /
armadillo/beta-catenin-like repeat-containing protein
similar to SP|Q14669 Thyroid receptor interacting
protein 12 (TRIP12) {Homo sapiens}; contains Pfam
profiles PF00632: HECT-domain (ubiquitin-transferase),
PF00514: Armadillo/beta-catenin-like repeat
Length = 1502
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -2
Query: 299 IDDSXSRPAAISCSTSLPLSSVITCLSCSASASIPTELRSCSTXAA 162
ID ++ AI C +S L S T +SC A +S P E+ S S+ A+
Sbjct: 809 IDSVEAKDQAIECQSS-QLQS--TSISCQAESSSPMEIDSESSDAS 851
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,231,716
Number of Sequences: 28952
Number of extensions: 115505
Number of successful extensions: 330
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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