Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F19
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.89 
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    28   2.1  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   3.6  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   8.3  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    26   8.3  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 522 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 632
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 446 TLSNDVQGRRWQTCLRRRQGQDK-PESQLEVNRSVGEQQGLLQ 571
           T+  D  GRR    L R++ + K  E + E  R   +QQG++Q
Sbjct: 155 TVYRDATGRRIDLVLARKEAKRKLKEKEEEARRQKEQQQGVVQ 197


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 507 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 623
           K SP+V+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 263 ITNVVNKLIRNNKMNCMEYAYQLWLQGL 346
           +T+  NKL+ ++  +  +YAY L LQ L
Sbjct: 40  LTDTPNKLLTDHDQSASDYAYALKLQQL 67


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 172 LQNXVRDVGSCSIQRCHEKTEKNXSGLQLWSGEA 71
           LQ+ ++D+G+ S+   HE  +K+    +L S  A
Sbjct: 474 LQHALQDIGTKSLDELHEAVDKHEVRFELRSSAA 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,740
Number of Sequences: 5004
Number of extensions: 53722
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)