Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F19
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    32   0.45 
At5g06370.1 68418.m00713 NC domain-containing protein contains P...    28   7.3  
At5g63450.1 68418.m07965 cytochrome P450, putative                     28   9.6  

>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = +3

Query: 57   LGHTQASPLQSCSPLSFFSVFSWHLCMLQLPTSLTXFWRXSFTIASSSPITXV 215
            LG   ++ +Q C  ++  +  +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1065 LGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


>At5g06370.1 68418.m00713 NC domain-containing protein contains Pfam
           domain, PF04970: NC domain
          Length = 259

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -2

Query: 361 GRCXLEXLEPKLIGVLHAVHLVVS----YQFVHDICDDFALLXXV*MLALFNRT 212
           G C L   +P  I V  A HL+ +    Y    + C+DFA+     +L L  RT
Sbjct: 117 GTCTLAVADPNEIVVHRAKHLLQNGFGCYDVFKNNCEDFAIYCKTALLVLEGRT 170


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 498 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVG 617
           G+D TS  ++W    L +N+ V  KIL+  RN+   LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,241,134
Number of Sequences: 28952
Number of extensions: 289034
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)