Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_F17
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 155 6e-39
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 150 3e-37
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 29 0.90
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 2.1
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 2.7
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 6.3
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 8.4
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 8.4
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 155 bits (377), Expect = 6e-39
Identities = 79/122 (64%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
Frame = +2
Query: 104 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 283
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59
Query: 284 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 460
+T+FGGG+STGFALIYD+ + KKFEP +RL R G E ++ R+QRK+RKNR KKV
Sbjct: 60 LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVF 119
Query: 461 GT 466
GT
Sbjct: 120 GT 121
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 150 bits (363), Expect = 3e-37
Identities = 74/122 (60%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
Frame = +2
Query: 104 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 283
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59
Query: 284 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 460
+T++GGG++TGFALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV
Sbjct: 60 LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVF 119
Query: 461 GT 466
GT
Sbjct: 120 GT 121
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.90
Identities = 29/79 (36%), Positives = 38/79 (48%)
Frame = +1
Query: 169 ADGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRS 348
A G +SR Q+DRD E R+N + R S R++D RR R D R+ R
Sbjct: 14 AQGRNYESSRSRGDQRDRDYREYRRNYRD-ERSS--RRYEDSQRRDYSPARRRD-RYERH 69
Query: 349 GQEVRAQAQVSPPRPVREE 405
+ VR + SP RPV E
Sbjct: 70 RESVREE---SPRRPVEHE 85
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 356 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 454
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 221 EIREKLAKMYKVTPDVVFVFGFKTNFGG 304
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 268 SVRIRFQDKLRRWQVNWIRFDLRHTRSGQEVRAQ-AQVSPPRPVREEEA 411
S R + +LRR + DLR +R G E RA+ A+ PR V E A
Sbjct: 385 SEAFRRRQELRRERRRQAEKDLRLSRMGAEKRAKLAEKDRPRDVAERVA 433
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 136 ASANSRCSFTHFELFSII 83
+S SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 752 TCLLQLIMVTNKAIASXISQIKHFFH 675
+CL+ L TN I + KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,187
Number of Sequences: 5004
Number of extensions: 58208
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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