Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F17
         (900 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)           30   2.2  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  29   5.1  
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)                     29   5.1  
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)                      29   5.1  

>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 512

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -3

Query: 421 FARGPLLLVQAVAG*PVLGLELLGQIECVVDQSESS*LATSEVCLETEYEHYIGSNLVHF 242
           F +G   L + V    ++GLEL  +I+ ++D++ S        CL +E   +   N   F
Sbjct: 56  FFQGDSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACLPSEVPAF--CNTERF 113

Query: 241 GELLTDLGLA 212
           G LL D+  A
Sbjct: 114 GLLLVDVRCA 123


>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
          Length = 585

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 24/76 (31%), Positives = 39/76 (51%)
 Frame = +1

Query: 196 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGQEVRAQAQ 375
           R+T++  DR    A+ NV   S   V++R  D ++   V+ ++ D R + SGQ+V   ++
Sbjct: 281 RRTSQSNDR----AQGNVTVVSTAHVQVRADD-VQAMNVSGVKSDGRPSSSGQDVYDGSR 335

Query: 376 VSPPRPVREEEAHAQT 423
            S   P    E  AQT
Sbjct: 336 QSTHGPALPWEELAQT 351


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 268 YIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANS 122
           +I  N  +F   + DLG+A  +   +  + +H L R Q+VGH  A   S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 368 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 460
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 79  RHGLASHDKKKRERPSLVARERMKKRLRKIR 109


>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
          Length = 1376

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 341  LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 457
            LDL      KHR  RH   EKK    K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037


>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
          Length = 417

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 368 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 460
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,621,953
Number of Sequences: 59808
Number of extensions: 450403
Number of successful extensions: 1060
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)