Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_F17
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal pro... 175 5e-44
Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 40 0.002
Z81036-2|CAD30433.1| 431|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81036-1|CAB02742.1| 473|Caenorhabditis elegans Hypothetical pr... 29 6.0
AF291851-1|AAK55968.1| 103|Caenorhabditis elegans G protein sig... 29 6.0
AL132876-23|CAD92403.1| 210|Caenorhabditis elegans Hypothetical... 28 7.9
AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical ... 28 7.9
AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical ... 28 7.9
>AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 24 protein.
Length = 131
Score = 175 bits (425), Expect = 5e-44
Identities = 81/116 (69%), Positives = 96/116 (82%), Gaps = 1/116 (0%)
Frame = +2
Query: 122 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 301
TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V FGF++ G
Sbjct: 6 TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65
Query: 302 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 466
GGKS GFAL+YDT+D AKKFEPK+RL R GL K ++P RKQRKERKNR KKVRGT
Sbjct: 66 GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVRGT 121
>Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical
protein T26G10.3 protein.
Length = 91
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 173 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 271
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 317 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 445
GF L+YDT D A K++P+H + H R + +RKE++ R
Sbjct: 54 GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95
>Z81036-2|CAD30433.1| 431|Caenorhabditis elegans Hypothetical
protein C16C2.2b protein.
Length = 431
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +1
Query: 238 RQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGQEVRAQAQVSPPRP 393
RQN QGY R+RF K + W D T Q + PP+P
Sbjct: 201 RQNAQGYRCLMDRLRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQP 252
>Z81036-1|CAB02742.1| 473|Caenorhabditis elegans Hypothetical
protein C16C2.2a protein.
Length = 473
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +1
Query: 238 RQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGQEVRAQAQVSPPRP 393
RQN QGY R+RF K + W D T Q + PP+P
Sbjct: 201 RQNAQGYRCLMDRLRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQP 252
>AF291851-1|AAK55968.1| 103|Caenorhabditis elegans G protein
signaling regulator EAT-16 protein.
Length = 103
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +1
Query: 238 RQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGQEVRAQAQVSPPRP 393
RQN QGY R+RF K + W D T Q + PP+P
Sbjct: 1 RQNAQGYRCLMDRLRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQP 52
>AL132876-23|CAD92403.1| 210|Caenorhabditis elegans Hypothetical
protein Y105E8A.28 protein.
Length = 210
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 337 HTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT*EQNEEGP 459
H R+ + R + V PP+ E E A A EQN GP
Sbjct: 26 HLRNEELHRFRQAVPPPQQAEEAEEEADVAENVVEQNRLGP 66
>AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical
protein C45H4.14b protein.
Length = 131
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 329 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 454
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 17 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57
>AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical
protein C45H4.14a protein.
Length = 178
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 329 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 454
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 64 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,362
Number of Sequences: 27780
Number of extensions: 335538
Number of successful extensions: 906
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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