Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F16
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.64 
AL117203-15|CAD57713.2|  670|Caenorhabditis elegans Hypothetical...    26   6.6  
AL117203-14|CAD57712.2|  587|Caenorhabditis elegans Hypothetical...    26   6.7  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 612 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 734
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>AL117203-15|CAD57713.2|  670|Caenorhabditis elegans Hypothetical
           protein Y48C3A.5b protein.
          Length = 670

 Score = 25.8 bits (54), Expect(2) = 6.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 560 EHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLP 676
           EH + RR S   R+      Y A PP    V SP+P  P
Sbjct: 219 EHDRQRRMSHFARSNAV--HYAAAPPPRKQVSSPLPDFP 255



 Score = 21.0 bits (42), Expect(2) = 6.6
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +2

Query: 782 GCVHEPPFXPXAXPYPVTIV*VHPVXXTYRP 874
           G  H   + P A P P  ++  +P    Y P
Sbjct: 262 GHAHSRSWNPGAQPSPPPLIDPNPYRQFYEP 292


>AL117203-14|CAD57712.2|  587|Caenorhabditis elegans Hypothetical
           protein Y48C3A.5a protein.
          Length = 587

 Score = 25.8 bits (54), Expect(2) = 6.7
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 560 EHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLP 676
           EH + RR S   R+      Y A PP    V SP+P  P
Sbjct: 219 EHDRQRRMSHFARSNAV--HYAAAPPPRKQVSSPLPDFP 255



 Score = 21.0 bits (42), Expect(2) = 6.7
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +2

Query: 782 GCVHEPPFXPXAXPYPVTIV*VHPVXXTYRP 874
           G  H   + P A P P  ++  +P    Y P
Sbjct: 262 GHAHSRSWNPGAQPSPPPLIDPNPYRQFYEP 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,421,558
Number of Sequences: 27780
Number of extensions: 374636
Number of successful extensions: 880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)