Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F13
         (875 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    34   0.001
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    28   0.11 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    27   0.26 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.78 
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    25   1.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   1.0  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   1.8  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    22   7.3  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    22   7.3  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 216 KKKKASKPW-CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLYTGPGLSIHCMQVH 380
           K     +P+ C  CNR F  + +L  H++     K F+C  CHK+      L  H M++H
Sbjct: 127 KDSSRDRPFTCEVCNRSFGYKHVLQNHERTHTGEKPFECQECHKRFTRDHHLKTH-MRLH 185


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +3

Query: 243 CWYCNREFDDEKILIQHQKA----KHFKCHICHK 332
           C YCNR+F     L+ H++     + + C IC K
Sbjct: 82  CKYCNRQFTKSYNLLIHERTHTDERPYSCDICGK 115


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
 Frame = +3

Query: 225 KASKP-WCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLYTGPGLSIHCMQVHK 383
           K S P  C  C+R    +  L  H +     + FKC IC +   T   L  H M VH+
Sbjct: 130 KLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTH-MGVHR 186



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 285 IQHQKAKHFKCHICHKKLYTGPGLSIH 365
           I+H+ +   +C ICH+ L     L +H
Sbjct: 127 IEHKLSDPNQCVICHRVLSCKSALQMH 153


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
 Frame = -1

Query: 488 LMFFHIFRGYTFHSI---NFYFYI*PIWQ*IWYFVYGFFMY-LHAVYGQPRSCVQLFVTN 321
           L+F+  F  +T H +    +++Y   I   ++YF Y F ++ +H ++     C+  FV  
Sbjct: 83  LLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVHLLF---LLCIYYFVVP 139

Query: 320 VTFKM-LRFLMLDENLFVVKLPVTIPAPRFGCLLLLPT 210
           + F + + +      +F V L   +    F C  ++ T
Sbjct: 140 LFFLLCIYYFYCAFIIFTVHLLFLLCIYHFFCAFIIFT 177


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 291 HQKAKHFKCHICHKKLYTGPGLSIHCMQVH 380
           H   K F+C  CHK+      L  H M++H
Sbjct: 4   HTGEKPFECQECHKRFTRDHHLKTH-MRLH 32


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +3

Query: 249 YCNREF--DDE--KILIQHQKAKHFKCHICHKKLYTGPGLSIH 365
           +C + F   DE  + L  H   K F C IC+K+      L+ H
Sbjct: 351 FCGKRFTRSDELQRHLRTHTGEKRFACPICNKRFMRSDHLAKH 393


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -1

Query: 398 FVYGFFMYLHAVYGQPRSCVQLFVTNVTFKMLRFLMLDENLFVVKL 261
           FV+ +F+YL  VY    S  +  + N  + + +F++         L
Sbjct: 145 FVFCYFIYLFTVYYIYYSVHEASIINFGYTLAKFMIFTSTCIYTNL 190


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/74 (20%), Positives = 29/74 (39%)
 Frame = +3

Query: 249 YCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSN 428
           +  ++ +D + L  +   K    H+    L    G+ I    +  + I           N
Sbjct: 45  FAGKQLEDGRTLSDYNIQKESTLHLV---LRLRGGMQIFVKTLTGKTITLEVEPSDTIEN 101

Query: 429 IEIEIYGMEGIPPE 470
           ++ +I   EGIPP+
Sbjct: 102 VKAKIQDKEGIPPD 115



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/74 (20%), Positives = 29/74 (39%)
 Frame = +3

Query: 249 YCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSN 428
           +  ++ +D + L  +   K    H+    L    G+ I    +  + I           N
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLV---LRLRGGMQIFVKTLTGKTITLEVEPSDTIEN 177

Query: 429 IEIEIYGMEGIPPE 470
           ++ +I   EGIPP+
Sbjct: 178 VKAKIQDKEGIPPD 191



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/74 (20%), Positives = 29/74 (39%)
 Frame = +3

Query: 249 YCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSN 428
           +  ++ +D + L  +   K    H+    L    G+ I    +  + I           N
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLV---LRLRGGMQIFVKTLTGKTITLEVEPSDTIEN 253

Query: 429 IEIEIYGMEGIPPE 470
           ++ +I   EGIPP+
Sbjct: 254 VKAKIQDKEGIPPD 267



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/74 (20%), Positives = 29/74 (39%)
 Frame = +3

Query: 249 YCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSN 428
           +  ++ +D + L  +   K    H+    L    G+ I    +  + I           N
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTLHLV---LRLRGGMQIFVKTLTGKTITLEVEPSDTIEN 329

Query: 429 IEIEIYGMEGIPPE 470
           ++ +I   EGIPP+
Sbjct: 330 VKAKIQDKEGIPPD 343



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/74 (20%), Positives = 29/74 (39%)
 Frame = +3

Query: 249 YCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSN 428
           +  ++ +D + L  +   K    H+    L    G+ I    +  + I           N
Sbjct: 349 FAGKQLEDGRTLSDYNIQKESTLHLV---LRLRGGMQIFVKTLTGKTITLEVEPSDTIEN 405

Query: 429 IEIEIYGMEGIPPE 470
           ++ +I   EGIPP+
Sbjct: 406 VKAKIQDKEGIPPD 419



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/74 (20%), Positives = 29/74 (39%)
 Frame = +3

Query: 249 YCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSN 428
           +  ++ +D + L  +   K    H+    L    G+ I    +  + I           N
Sbjct: 425 FAGKQLEDGRTLSDYNIQKESTLHLV---LRLRGGMQIFVKTLTGKTITLEVEPSDTIEN 481

Query: 429 IEIEIYGMEGIPPE 470
           ++ +I   EGIPP+
Sbjct: 482 VKAKIQDKEGIPPD 495



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/74 (20%), Positives = 29/74 (39%)
 Frame = +3

Query: 249 YCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSN 428
           +  ++ +D + L  +   K    H+    L    G+ I    +  + I           N
Sbjct: 501 FAGKQLEDGRTLSDYNIQKESTLHLV---LRLRGGMQIFVKTLTGKTITLEVEPSDTIEN 557

Query: 429 IEIEIYGMEGIPPE 470
           ++ +I   EGIPP+
Sbjct: 558 VKAKIQDKEGIPPD 571



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/74 (20%), Positives = 29/74 (39%)
 Frame = +3

Query: 249 YCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSN 428
           +  ++ +D + L  +   K    H+    L    G+ I    +  + I           N
Sbjct: 577 FAGKQLEDGRTLSDYNIQKESTLHLV---LRLRGGMQIFVKTLTGKTITLEVEPSDTIEN 633

Query: 429 IEIEIYGMEGIPPE 470
           ++ +I   EGIPP+
Sbjct: 634 VKAKIQDKEGIPPD 647


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/74 (20%), Positives = 29/74 (39%)
 Frame = +3

Query: 249 YCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSN 428
           +  ++ +D + L  +   K    H+    L    G+ I    +  + I           N
Sbjct: 17  FAGKQLEDGRTLSDYNIQKESTLHLV---LRLRGGMQIFVKTLTGKTITLEVEPSDTIEN 73

Query: 429 IEIEIYGMEGIPPE 470
           ++ +I   EGIPP+
Sbjct: 74  VKAKIQDKEGIPPD 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,136
Number of Sequences: 336
Number of extensions: 3537
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)