Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_F13
(875 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 146 2e-35
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 37 0.020
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 36 0.047
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 31 0.76
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 29 3.1
At2g24030.2 68415.m02870 expressed protein and genefinder 29 5.4
At2g24030.1 68415.m02871 expressed protein and genefinder 29 5.4
At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein ... 28 7.1
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 28 7.1
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 28 9.4
At5g28720.1 68418.m03528 hypothetical protein 28 9.4
At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A) co... 28 9.4
At1g71760.1 68414.m08294 hypothetical protein 28 9.4
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 28 9.4
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 146 bits (353), Expect = 2e-35
Identities = 61/94 (64%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Frame = +3
Query: 207 MGRKKKKAS-KPWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHK 383
MG+KKK+A+ K WC+YC+REFDDEKIL+QHQKAKHFKCH+CHKKL T G+ IH +QVHK
Sbjct: 1 MGKKKKRATEKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMVIHVLQVHK 60
Query: 384 EAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEH 485
E + KVPN+ R + +IEIYGM+GIPP + H
Sbjct: 61 ENVTKVPNAKDGRDSTDIEIYGMQGIPPHVLTAH 94
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 36.7 bits (81), Expect = 0.020
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 237 PWCWYCNREFDDEKILIQHQKAKHFKCHICHK 332
P C +C R F + L H +H+ CHIC +
Sbjct: 198 PMCEFCKRPFYGDNELYTHMSREHYTCHICQR 229
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 35.5 bits (78), Expect = 0.047
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 228 ASKPWCWYCNREFDDEKILIQHQKAKHFKCHICHK 332
A P C +C F + L H +H+ CH+C +
Sbjct: 195 AGHPMCEFCRNPFYGDNELYTHMSTEHYTCHLCQR 229
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 31.5 bits (68), Expect = 0.76
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 243 CWYCNREFDDEKILIQHQKAKHF 311
C YC + F+DEK L +H +H+
Sbjct: 107 CGYCKKSFNDEKFLDKHFSTRHY 129
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 261 EFDDEKILIQHQKAKHF-KCHICHKKLYTGPGLSIHCMQVHKEAIDKVPN 407
E D K L K HF KC IC + TG L H M+ H+ ++ P+
Sbjct: 77 EQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGH-MRRHRSSMTVEPS 125
>At2g24030.2 68415.m02870 expressed protein and genefinder
Length = 374
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 210 GRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFKCHI--CHKKLYTGPGLSIHCMQVHK 383
G KKKK + WC CN + + E+ + H K + KL T P S++ K
Sbjct: 296 GEKKKKETV-WCKTCNIQTNSEQTMRNHTLGKKHMALLEKQQNKLITVPVRSLNADPGQK 354
Query: 384 EAI 392
E++
Sbjct: 355 ESV 357
>At2g24030.1 68415.m02871 expressed protein and genefinder
Length = 455
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 210 GRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFKCHI--CHKKLYTGPGLSIHCMQVHK 383
G KKKK + WC CN + + E+ + H K + KL T P S++ K
Sbjct: 377 GEKKKKETV-WCKTCNIQTNSEQTMRNHTLGKKHMALLEKQQNKLITVPVRSLNADPGQK 435
Query: 384 EAI 392
E++
Sbjct: 436 ESV 438
>At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 272
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 243 CWYCNREFDDEKILIQHQKAKHFK-CHICHKKLYTGPGLSIHC 368
C +C + F +EK L +H ++H+ + H K + ++HC
Sbjct: 109 CGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDLCGALHC 151
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +1
Query: 742 PDVHPXNLHSPXTARDXXAPPXXXXVXXXRPPRXRXXEXPPXP 870
P P + HSP +PP V PPR E P P
Sbjct: 67 PPPPPPHKHSPPPLSQSLSPPPLITVIHPPPPRFYYFESTPPP 109
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +3
Query: 249 YCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSN 428
+ ++ DD + L + K H+ L G+ I + ++ I S N
Sbjct: 123 FAGKQLDDGRTLADYNIQKESTLHLV---LRLRGGMQIFVRTLTRKTIALEVESSDTTDN 179
Query: 429 IEIEIYGMEGIPPE 470
++ +I EGIPP+
Sbjct: 180 VKAKIQDKEGIPPD 193
>At5g28720.1 68418.m03528 hypothetical protein
Length = 142
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 402 PNSLPNRSNIEIEIYGMEGIPPEDVKEH 485
P++L + ++E E Y +G+P +D++EH
Sbjct: 87 PHTLGVQLDLEQEPYDDDGVPADDIEEH 114
>At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A)
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
identical to cDNA putative histone deacetylase (HD2A)
GI:11066134
Length = 245
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 222 KKASKPWCWYCNREFDDEKILIQHQKAKH 308
K AS+ C C + F+ L H KAKH
Sbjct: 213 KSASQVSCGSCKKTFNSGNALESHNKAKH 241
>At1g71760.1 68414.m08294 hypothetical protein
Length = 259
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 201 VKMGRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFK 314
+++ +KKK ++K C CN++ +K+ Q KAK +
Sbjct: 17 MQVKQKKKSSNKWVCVICNQKQSVKKVFAQGYKAKELR 54
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 306 HFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSL 413
HF CH+C K L +H M H K P SL
Sbjct: 144 HFSCHVCFKTFNRYNNLQMH-MWGHGSQYRKGPESL 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,002,067
Number of Sequences: 28952
Number of extensions: 280633
Number of successful extensions: 823
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -