Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F12
         (903 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    50   1e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    47   6e-04
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.35 
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    37   0.81 
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    36   1.1  
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    33   10.0 

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 49.6 bits (113), Expect = 1e-04
 Identities = 29/56 (51%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 692 INESANARGXAVCVLGALPLPRSXTRCARSFGCGXRYXL-TXRR*YGYPXNQGIPQ 856
           I + A AR  AV VL ALPL RS TRC RS GCG      +  R YG P  QG+ Q
Sbjct: 267 IRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = +2

Query: 725 VCVLGALPLPRSXTRCARSFGCGXRYXLT 811
           +C  G +PLPRS TR ARSFGCG RY LT
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.9 bits (84), Expect = 0.35
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -1

Query: 759 ERGSGRAPNTQTAXPRALADSLMQ 688
           +R +  APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 36.7 bits (81), Expect = 0.81
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +1

Query: 808 HSKAVIRLSTXSGDTAGKXM 867
           HSKAVIRLST SGD AGK M
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 17/28 (60%), Positives = 17/28 (60%)
 Frame = -3

Query: 889 PFXGLXLTXFFLRYPLIXWITVLPPXSE 806
           P     LT  F  YPLI WITVLPP SE
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSE 46


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 33.1 bits (72), Expect = 10.0
 Identities = 14/19 (73%), Positives = 14/19 (73%)
 Frame = +1

Query: 493 DPXMIRYXDEFGQXXTXMQ 549
           DP MIRY DEFGQ  T MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,670,690
Number of Sequences: 1657284
Number of extensions: 10590459
Number of successful extensions: 19492
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19477
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81981722200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)