Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F12
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    31   0.30 
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    23   4.2  

>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -1

Query: 195 QNSRG*KTIENPQ*TN*ASNHADHFQF*KNS*IIHLKN*R-IDEDQRLTKV 46
           ++S+G   IENP   N + NH+D+  F + S  +H +N + +  D R TK+
Sbjct: 31  RDSQGQLGIENPPKCNNSGNHSDNLGFIEQSETVHPENEKALTPDLRDTKI 81


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -2

Query: 407 PYSLFYYKTVASRYPPAQSSASSNKKLAFFSI-ISSLHFLHAATLLQPLVEYSASQELHW 231
           P SLF      +  P ++SS+  +KK +  S  + S   L   T   PL+   + +  HW
Sbjct: 42  PVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHW 101

Query: 230 SMKFTKVTSA 201
           +++   + SA
Sbjct: 102 TIRHESMPSA 111


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 22.6 bits (46), Expect(2) = 4.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 208 LQLFSKFTGVKNY 170
           L L+SKFTG+K +
Sbjct: 824 LGLYSKFTGIKEF 836



 Score = 22.2 bits (45), Expect(2) = 4.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 181 VKNYRKSTINQLSFEPCRSLSILKEFIDYTLEELTD*RGP 62
           +  Y ++  N L  + CR   I   F+DY   ++ D   P
Sbjct: 873 ITTYEENLRNLLDDKKCRDELITFLFVDYADSKIQDIHRP 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,477
Number of Sequences: 5004
Number of extensions: 46407
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)