Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F11
         (903 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    53   9e-06
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    52   2e-05
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    39   0.20 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    36   1.4  
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    35   2.5  
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    35   3.3  
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    33   7.5  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 53.2 bits (122), Expect = 9e-06
 Identities = 30/57 (52%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 591 CXNESANARGEAVCVLGXLPLPRSLTRCARSFGCGERYXL-TQRR*YGYPQNQGIPQ 758
           C  + A AR EAV VL  LPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 52.4 bits (120), Expect = 2e-05
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = +3

Query: 615 RGEAVCVLGXLPLPRSLTRCARSFGCGERYXLT 713
           R   +C  G +PLPRSLTR ARSFGCGERY LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.7 bits (86), Expect = 0.20
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 589 SAXMNRPTRGERRFAYW 639
           +A MNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -3

Query: 640 PNTQTASPRALADSXMQ 590
           PNTQTASPRALADS MQ
Sbjct: 332 PNTQTASPRALADSLMQ 348


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 35.1 bits (77), Expect = 2.5
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +1

Query: 403 MIRYIDEFGQTTTXMQ 450
           MIRYIDEFGQTTT MQ
Sbjct: 349 MIRYIDEFGQTTTRMQ 364


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 34.7 bits (76), Expect = 3.3
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +2

Query: 716 KAVIRLSXESGDTAGKNM 769
           KAVIRLS ESGD AGKNM
Sbjct: 42  KAVIRLSTESGDNAGKNM 59


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 472 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSAXMNRPTRGERRFAYW 639
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,523,018
Number of Sequences: 1657284
Number of extensions: 7880030
Number of successful extensions: 14014
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14014
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81981722200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)