Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F10
         (901 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017329-1|AAH17329.1|  481|Homo sapiens HIV-1 Rev binding prote...    31   5.7  
AF053356-14|AAC78803.1|  318|Homo sapiens nucleoporin protein.         31   5.7  
AF015042-1|AAD01550.1|  481|Homo sapiens RAB-R protein protein.        31   5.7  

>BC017329-1|AAH17329.1|  481|Homo sapiens HIV-1 Rev binding
           protein-like protein.
          Length = 481

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 75  HEVCLNSWLGL*PSRSAVQYQSRAP*RQKMWMPYLLKSKRKFCPSSKM 218
           +EVC   WLGL  +R+++   SR P + K ++    + KR + P  ++
Sbjct: 104 NEVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQV 151


>AF053356-14|AAC78803.1|  318|Homo sapiens nucleoporin protein.
          Length = 318

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 75  HEVCLNSWLGL*PSRSAVQYQSRAP*RQKMWMPYLLKSKRKFCPSSKM 218
           +EVC   WLGL  +R+++   SR P + K ++    + KR + P  ++
Sbjct: 30  NEVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQV 77


>AF015042-1|AAD01550.1|  481|Homo sapiens RAB-R protein protein.
          Length = 481

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 75  HEVCLNSWLGL*PSRSAVQYQSRAP*RQKMWMPYLLKSKRKFCPSSKM 218
           +EVC   WLGL  +R+++   SR P + K ++    + KR + P  ++
Sbjct: 104 NEVCRKIWLGLFDARTSLVPNSRDPQKVKEFLQEKYEKKRWYVPPDQV 151


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,596,805
Number of Sequences: 237096
Number of extensions: 2321021
Number of successful extensions: 4374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4374
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)