Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_F10
(901 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 33 0.26
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 33 0.26
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 31 1.0
At2g36305.1 68415.m04456 CAAX amino terminal protease family pro... 30 2.4
At5g27230.1 68418.m03248 expressed protein ; expression support... 29 4.2
At1g78770.1 68414.m09180 cell division cycle family protein simi... 29 4.2
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 28 7.3
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly... 28 9.7
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 586 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 428
K R + R + + AL N+DVE +E+ L+E T G ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 586 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 428
K R + R + + AL N+DVE +E+ L+E T G ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 305 KAVEEFLKMYRTGFMPKNLEFSVFYD 382
KA+E F +MY+TG MP + +S D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264
>At2g36305.1 68415.m04456 CAAX amino terminal protease family
protein similar to CAAX prenyl protease 2 (EC 3.4.22.-)
(Prenyl protein-specific endoprotease 2)
(Farnesylated-proteins converting enzyme 2) (FACE-2)
from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256],
Drosophila melanogaster [SP|Q9U1H8]; contains Pfam
profile PF02517 CAAX amino terminal protease family
protein
Length = 242
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = -1
Query: 700 VNEVVVF---LVNAILSCGFRINEAILHLCYVNF-LQHFHIHKHFRVYFIR 560
V E +VF ++ +L GFRIN AI LC V F L H + HFR +IR
Sbjct: 93 VTEELVFRSCMIPLLLCAGFRINTAIF-LCPVLFSLAHLN---HFREMYIR 139
>At5g27230.1 68418.m03248 expressed protein ; expression supported
by MPSS
Length = 948
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 164 VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLK 328
V A+ +EK++K L D S E+ K KD+D+E + K+ VE+ K
Sbjct: 69 VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122
>At1g78770.1 68414.m09180 cell division cycle family protein similar
to cell division cycle protein GI:603230 from [Homo
sapiens]; contains Pfam profile PF00515 TPR Domain
148977 (apparently not full-length).
Length = 543
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 695 VYKANYSNAVLYNNEEQRLTYFTEDIGMNAYYYYFHSHYRSGGHXKN 835
V K YS+A+ + ++ LT DI M A + HYR H N
Sbjct: 17 VSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFHLLN 63
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 230 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 325
N +DEY K DYD + +D T K+A + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573
>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
identical to GI:9957293; contains Pfam profile: PF01397
terpene synthase family
Length = 591
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 182 EKQKKILSFFQD--VSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPK 355
EK +K+L+ Q + QL D+ K+G Y E +DN ++ + +
Sbjct: 82 EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141
Query: 356 NLEFSVF 376
LEF +F
Sbjct: 142 ALEFRLF 148
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,354,008
Number of Sequences: 28952
Number of extensions: 338049
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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