Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F09
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    27   3.6  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   8.4  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   8.4  

>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 548 RSAGGSVDADEGAIETIQITYKKNSL 625
           + AGG++ AD+  ++TIQ+  +KN +
Sbjct: 213 QGAGGAIPADKEFMQTIQLECEKNDI 238


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 282 CSQFDLVEIVFICVAFTFLLIILSQACRIL 371
           C++FD   I+ +  A +F+L+ILS  C  L
Sbjct: 237 CAEFDTSPIL-LSYALSFILMILSHICNSL 265


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -1

Query: 515 SITATAIQAISSKPIFDVQHIEVQQGLLVLSVDACGSISKGVV 387
           S  A+++ ++ ++ I  + HI +   LL ++V  CG I+  +V
Sbjct: 147 STFASSVFSVPAEAITTIFHISLTVSLLTMTVFLCGYIAGPIV 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,469
Number of Sequences: 5004
Number of extensions: 46701
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)