Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F09
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.0  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   8.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   8.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   8.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   8.8  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   8.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 255 PXFPPKSAICSQFDLVEIVFICVAF 329
           P FP     C  F L+ +VFI V +
Sbjct: 201 PEFPLYQLSCILFFLIPMVFIAVLY 225


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 297 LVEIVFICVAFTFLLIILSQACRILASG 380
           L+   F+C+A T L      +C+ L+ G
Sbjct: 10  LINAAFLCLASTILSESAGTSCKWLSEG 37


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 347 NNEEERESYTNKNYFDQIKL 288
           NN   ++ Y N NY +QI +
Sbjct: 101 NNNYNKKLYYNINYIEQIPI 120


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 347 NNEEERESYTNKNYFDQIKL 288
           NN   ++ Y N NY +QI +
Sbjct: 101 NNNYNKKLYYNINYIEQIPI 120


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 347 NNEEERESYTNKNYFDQIKL 288
           NN   ++ Y N NY +QI +
Sbjct: 101 NNNYNKKLYYNINYIEQIPI 120


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 347 NNEEERESYTNKNYFDQIKL 288
           NN   ++ Y N NY +QI +
Sbjct: 101 NNNYNKKLYYNINYIEQIPI 120


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 347 NNEEERESYTNKNYFDQIKL 288
           NN   ++ Y N NY +QI +
Sbjct: 319 NNNNYKKLYYNINYIEQIPI 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,416
Number of Sequences: 438
Number of extensions: 3981
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)