Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F08
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...   137   2e-33
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...   136   5e-33
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    29   0.67 
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.6  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   8.3  

>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  137 bits (332), Expect = 2e-33
 Identities = 61/98 (62%), Positives = 75/98 (76%)
 Frame = +1

Query: 202 IHGGLVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 381
           +H GL  G+  A+KALD+RQA LCVL E CD+ AY KLV+ALC E Q PLVKV + K LG
Sbjct: 45  VHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPLVKVADPKILG 104

Query: 382 EWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 495
           EWAGLC +D+DG ARK+VGCSCV + D+GE++ AL  L
Sbjct: 105 EWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score =  136 bits (328), Expect = 5e-33
 Identities = 59/98 (60%), Positives = 75/98 (76%)
 Frame = +1

Query: 202 IHGGLVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 381
           +H GL  G+  A+KALD+RQA LCVL E CD+ AY KLV+ALC E + PL+KV + K LG
Sbjct: 42  VHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESETPLIKVADPKVLG 101

Query: 382 EWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 495
           EWAGLC +D+DG ARK+VGCSCV + D+GE++ AL  L
Sbjct: 102 EWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKL 139


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 220 HGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 381
           +GL+     ++ ++A L ++A   D       + ALC +  +P   V N  +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 483 RWSFLAEIFDDNTGAADNFPCLAIL 409
           RW +LA +F  N  A  N P + +L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +1

Query: 214 LVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 384
           ++ G+    KA+ K +  L +LA           +  LC ++ +P +   + + LGE
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGE 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,958
Number of Sequences: 5004
Number of extensions: 36838
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)