Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F08
         (892 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)              145   4e-35
SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.033
SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.033
SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            30   2.9  
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        29   3.8  
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score =  145 bits (352), Expect = 4e-35
 Identities = 64/86 (74%), Positives = 75/86 (87%)
 Frame = +1

Query: 202 IHGGLVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 381
           IH GL  GLH AAK+LDKR+A LC+L+  CDEA Y KLV+ALC EH IPL+KVD++KKLG
Sbjct: 34  IHDGLSRGLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93

Query: 382 EWAGLCKIDKDGKARKIVGCSCVVIK 459
           EWAGLCKIDK+GKARK+VGCSCVV+K
Sbjct: 94  EWAGLCKIDKEGKARKVVGCSCVVVK 119


>SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +1

Query: 250 DKRQAVLCVLAEX--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 393
           D     LCVL E    D     + +L++A C E+ IP+VKVD+++KL   AG
Sbjct: 2   DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53


>SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +1

Query: 250 DKRQAVLCVLAEX--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 393
           D     LCVL E    D     + +L++A C E+ IP+VKVD+++KL   AG
Sbjct: 2   DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53


>SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 372 FVVVNLDQWNLMFVAQSLNKFLVCGFITVLSQNT*YCLPLVKSFSG--CVKTVH 217
           F  VNL +W++ F A +L+++ +C F TV       C   V  F    C +TV+
Sbjct: 256 FQAVNLSRWSMCFQAVNLSRWFMC-FQTVNLSRWFMCFQAVNLFRWFMCFQTVN 308


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 64  FPGPXVPSXRHXPWLLLQSRSPPTPSCR 147
           F GP +   RH PW   QS  PP P C+
Sbjct: 321 FAGPTLRPPRHLPW---QSPPPPPPPCQ 345


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 220 HGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 384
           +G++     ++ ++A L V+A   D       + ALC + Q+P   V    +LG+
Sbjct: 47  YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 101


>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 220 HGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 384
           +G++     ++ ++A L V+A   D       + ALC + Q+P   V    +LG+
Sbjct: 138 YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 192


>SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 456 DDNTGAADNFPCLAILVNLAETSPFSKLF 370
           DD    +D +PC+ I+VN++ T   +K F
Sbjct: 10  DDGLTCSDVYPCVEIMVNISSTGSETKKF 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,143,743
Number of Sequences: 59808
Number of extensions: 318768
Number of successful extensions: 707
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)