Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F08
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...   129   3e-30
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    30   1.9  
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    29   5.9  
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    29   5.9  
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score =  129 bits (311), Expect = 3e-30
 Identities = 58/98 (59%), Positives = 70/98 (71%)
 Frame = +1

Query: 211 GLVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWA 390
           GL  GLH   KALDKR+A  CVLAE CDE  Y KLV+ LC EHQIPL+KV + K +GE+ 
Sbjct: 38  GLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYC 97

Query: 391 GLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDY 504
           GLCK DK+GKARK+VGCS  V+ ++G E     +L DY
Sbjct: 98  GLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDY 135


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 214 LVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 381
           L  G+    K L + +  +C+LA           +  +C E +IP V + + ++LG
Sbjct: 69  LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 331 NEHQIPLVKVDNNKKLGEWAGLCK 402
           N++Q+ +  V+NNKK+ +W G  K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +1

Query: 220 HGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 381
           HG++   + ++ R+A L ++A   +       + ALC ++ +P   +     LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +1

Query: 220 HGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 381
           HG++   + ++ R+A L ++A   +       + ALC ++ +P   +     LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 309 LVCGFITVLSQNT*YCLPLVKSF-SGCVKTV 220
           L+C  I ++ Q +  CLPLVK F S C K++
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCKKSI 848


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 309 LVCGFITVLSQNT*YCLPLVKSF-SGCVKTV 220
           L+C  I ++ Q +  CLPLVK F S C K++
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCKKSI 848


>AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.9 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 208 GGLVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKL 315
           GGLV G+  A KAL     V+ V++E C +A  K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,939
Number of Sequences: 27780
Number of extensions: 231262
Number of successful extensions: 562
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)