Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_F08
(892 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 143 2e-34
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 143 2e-34
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 143 2e-34
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 134 7e-32
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 134 7e-32
At1g51920.1 68414.m05853 expressed protein 30 1.8
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac... 30 2.4
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 29 3.1
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 29 5.5
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 29 5.5
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 28 7.2
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 143 bits (346), Expect = 2e-34
Identities = 63/101 (62%), Positives = 81/101 (80%)
Frame = +1
Query: 205 HGGLVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 384
+GG+V GLH +AK ++KR A LCVLAE C++ Y KLV+ALC +H I L+ V + K LGE
Sbjct: 41 YGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGE 100
Query: 385 WAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 507
WAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 101 WAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 143 bits (346), Expect = 2e-34
Identities = 63/101 (62%), Positives = 81/101 (80%)
Frame = +1
Query: 205 HGGLVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 384
+GG+V GLH +AK ++KR A LCVLAE C++ Y KLV+ALC +H I L+ V + K LGE
Sbjct: 41 YGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGE 100
Query: 385 WAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 507
WAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 101 WAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 143 bits (346), Expect = 2e-34
Identities = 63/101 (62%), Positives = 81/101 (80%)
Frame = +1
Query: 205 HGGLVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 384
+GG+V GLH +AK ++KR A LCVLAE C++ Y KLV+ALC +H I L+ V + K LGE
Sbjct: 41 YGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGE 100
Query: 385 WAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 507
WAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 101 WAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 134 bits (324), Expect = 7e-32
Identities = 58/101 (57%), Positives = 78/101 (77%)
Frame = +1
Query: 205 HGGLVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 384
+GG+V GLH AK ++KR A L VLAE C++ Y KLV+ALC +H++ L+ V + K LGE
Sbjct: 41 YGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGE 100
Query: 385 WAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 507
WAGLCKID +G ARK+VGCSC+V+KDFGEET AL ++ ++
Sbjct: 101 WAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHI 141
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 134 bits (324), Expect = 7e-32
Identities = 58/101 (57%), Positives = 78/101 (77%)
Frame = +1
Query: 205 HGGLVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 384
+GG+V GLH AK ++KR A L VLAE C++ Y KLV+ALC +H++ L+ V + K LGE
Sbjct: 41 YGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGE 100
Query: 385 WAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 507
WAGLCKID +G ARK+VGCSC+V+KDFGEET AL ++ ++
Sbjct: 101 WAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHI 141
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -1
Query: 424 LPCHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSXQP 278
+P P S R PI A CC+P P+ S RC V+ HHS P
Sbjct: 33 IPRAPISSRR--PICPACVCCEPAPLGSCCRCCASPIVT-QTHHHSQSP 78
>At5g65130.1 68418.m08193 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor
Length = 277
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 316 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 441
++++CN +PL +++ K E +G K +K+ + +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +1
Query: 208 GGLVHGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEW 387
G L +GL + K + + + L E ++ +KK+ + P+++ NKK E
Sbjct: 1372 GSLRNGLEFSEK--ESTVSKMLKLDESKEKEEHKKIRKPTEERSNAPVIEKQGNKKNAEE 1429
Query: 388 AGLCKIDKDGKARKIVG 438
KID+ GK ++I G
Sbjct: 1430 EMQDKIDRRGKNQEIKG 1446
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 220 HGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 381
+GL+ +++ +A L V+A D + ALC + ++P V +LG
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 220 HGLHAAAKALDKRQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 381
+GL+ +++ +A L V+A D + ALC + ++P V +LG
Sbjct: 129 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 247 LDKRQAVLCVLAEXCDEAAYKKLVQALCNE 336
L RQA++C L+E C ++Y K VQ NE
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINE 382
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,608,013
Number of Sequences: 28952
Number of extensions: 210970
Number of successful extensions: 523
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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