Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F07
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   168   1e-42
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   164   1e-41
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   3.6  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  168 bits (408), Expect = 1e-42
 Identities = 86/162 (53%), Positives = 109/162 (67%)
 Frame = +1

Query: 139 LVPVKGPRGVLKRXFKHLAVXIRMVXPRLLKVXQWFGSKKXLAAVRTVCSHVXXMIKGVT 318
           LV VKGPRGVLK+  + + + ++      +K   W GS+K  A +RT  S +  MI GVT
Sbjct: 25  LVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRKHNACIRTAYSIINNMIIGVT 83

Query: 319 KGFQYKXRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELI 498
           +GF+YK R VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KDE+I
Sbjct: 84  QGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEII 143

Query: 499 IEGNSLEDVSSSAALIQQSTTVXXXDIXKFLDGLYVSEKTTV 624
           IEGNSLE+VS SAA I+Q   V   DI KFLDG+YVSE+  +
Sbjct: 144 IEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  164 bits (399), Expect = 1e-41
 Identities = 83/161 (51%), Positives = 108/161 (67%)
 Frame = +1

Query: 142 VPVKGPRGVLKRXFKHLAVXIRMVXPRLLKVXQWFGSKKXLAAVRTVCSHVXXMIKGVTK 321
           V V GPRG LK+  +H+ + ++      +K   W GS+K  A +R+V S +  MI GVT+
Sbjct: 26  VTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNACIRSVYSIINNMIIGVTQ 84

Query: 322 GFQYKXRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELII 501
           GF+YK R VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KDE+I+
Sbjct: 85  GFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIL 144

Query: 502 EGNSLEDVSSSAALIQQSTTVXXXDIXKFLDGLYVSEKTTV 624
           EGNSLE+VS SAA I+Q   V   DI KFLDG+YVSE+  +
Sbjct: 145 EGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 469 NSPKQKDELIIEGNSLEDVSSSAALIQQS 555
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,145
Number of Sequences: 5004
Number of extensions: 34968
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)