Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F07
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    187   1e-47
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   185   4e-47
08_02_0136 - 13034434-13034991,13035999-13036034                       29   6.6  
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632...    29   6.6  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  187 bits (455), Expect = 1e-47
 Identities = 91/166 (54%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
 Frame = +1

Query: 139 LVPVKGPRGVLKRXFKHLAVXIRMVXP-RLLKVXQWFGSKKXLAAVRTVCSHVXXMIKGV 315
           +V V+GPRG L R FKHL +  +++   R L+V  WFG+++ +AA+RT  SHV  +I GV
Sbjct: 24  VVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGV 83

Query: 316 TKGFQYKXRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDEL 495
           TKG++YK R VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KDEL
Sbjct: 84  TKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDEL 143

Query: 496 IIEGNSLEDVSSSAALIQQSTTVXXXDIXKFLDGLYVSEKTTVVLD 633
           +++GN +E VS SAALI Q   V   DI KFLDG+YVS+K T+  D
Sbjct: 144 VLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  185 bits (451), Expect = 4e-47
 Identities = 91/168 (54%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
 Frame = +1

Query: 139 LVPVKGPRGVLKRXFKHLAVXIRMVXP---RLLKVXQWFGSKKXLAAVRTVCSHVXXMIK 309
           +V V+GPRG L R FKHL +  +++     R L+V  WFG+++ +AA+RT  SHV  +I 
Sbjct: 15  VVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIRTAISHVQNLIT 74

Query: 310 GVTKGFQYKXRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 489
           GVTKG++YK R VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KD
Sbjct: 75  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 134

Query: 490 ELIIEGNSLEDVSSSAALIQQSTTVXXXDIXKFLDGLYVSEKTTVVLD 633
           EL+++GN +E VS SAALI Q   V   DI KFLDG+YVS+K T+  D
Sbjct: 135 ELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 182


>08_02_0136 - 13034434-13034991,13035999-13036034
          Length = 197

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/86 (20%), Positives = 43/86 (50%)
 Frame = +1

Query: 391 SIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXX 570
           ++ E+ + + ++++R V+++  V  +N+  +     +EGN++         I  STTV  
Sbjct: 105 TVWELTSIMSDEWLRDVELSSEVIQINTAPRTIPCHLEGNNVG--------ILYSTTVGV 156

Query: 571 XDIXKFLDGLYVSEKTTVVLDDXYKH 648
             + +     Y+S+K    ++  +KH
Sbjct: 157 NIVSESFAFAYLSDKVITPINKFFKH 182


>04_03_0278 -
           13761999-13762462,13762628-13762727,13763065-13763289,
           13763347-13763415,13763605-13764432,13764706-13764779,
           13818821-13818905
          Length = 614

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/86 (20%), Positives = 42/86 (48%)
 Frame = +1

Query: 391 SIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXX 570
           ++ E+ + + +++++ V+++  V  +NS  +     +EGN++        +I  S  V  
Sbjct: 58  TVRELTSIMSDEWLKEVELSSEVIPINSTPRPIPCHLEGNNV--------VILYSPIVGV 109

Query: 571 XDIXKFLDGLYVSEKTTVVLDDXYKH 648
             + +     Y+S+KT    D  +KH
Sbjct: 110 NIVSESFAFAYLSDKTITPTDKFFKH 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,905,098
Number of Sequences: 37544
Number of extensions: 241820
Number of successful extensions: 409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)