Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F07
         (892 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        128   5e-30
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               29   5.1  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  128 bits (310), Expect = 5e-30
 Identities = 56/105 (53%), Positives = 75/105 (71%)
 Frame = +1

Query: 139 LVPVKGPRGVLKRXFKHLAVXIRMVXPRLLKVXQWFGSKKXLAAVRTVCSHVXXMIKGVT 318
           +V V GPRG LKR F+HL + +  V    ++V  WF S+K LA V+T+ +H+  MIKGV 
Sbjct: 580 VVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFASRKELACVKTIITHIENMIKGVI 639

Query: 319 KGFQYKXRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 453
            G++YK RAVYAHFPIN    E  +++E+RNFLGEKY+RRV+M P
Sbjct: 640 YGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684


>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 48.4 bits (110), Expect = 8e-06
 Identities = 23/30 (76%), Positives = 25/30 (83%)
 Frame = +1

Query: 538 ALIQQSTTVXXXDIXKFLDGLYVSEKTTVV 627
           ALIQQST V   DI KFLDG+YVSEKTT+V
Sbjct: 2   ALIQQSTKVKNKDIRKFLDGVYVSEKTTIV 31


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +1

Query: 385 GNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 558
           G  ++ +++ LG++    +      T +       K+EL    +SLE+VS   A +Q S 
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255

Query: 559 TVXXXDIXKFLDGLYVSEK 615
                +I      L V+EK
Sbjct: 256 LTKDEEISSLTKRLQVTEK 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,910,157
Number of Sequences: 59808
Number of extensions: 277499
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)