Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F07
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   202   4e-52
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    33   0.21 

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  202 bits (492), Expect = 4e-52
 Identities = 93/166 (56%), Positives = 120/166 (72%)
 Frame = +1

Query: 139 LVPVKGPRGVLKRXFKHLAVXIRMVXPRLLKVXQWFGSKKXLAAVRTVCSHVXXMIKGVT 318
           +V V GPRG +++ F+HL + +  +    L+V +WFG +K LAA+RTVCSH+  MIKGVT
Sbjct: 24  IVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVT 83

Query: 319 KGFQYKXRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELI 498
            GF+YK R+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S  QKDE++
Sbjct: 84  VGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIV 143

Query: 499 IEGNSLEDVSSSAALIQQSTTVXXXDIXKFLDGLYVSEKTTVVLDD 636
           +EGN ++ VS +AA IQQST V   DI KFLDG+YVSEKTT+V  D
Sbjct: 144 VEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = -2

Query: 627 HNSCFLRYIKTIQELSDIXXLDCSRLLNESSRARDIFQR 511
           +N+C LR IK +  L+ +  L+ SRL N  SR RD+F++
Sbjct: 25  NNNCKLRQIKPVPNLTRL--LEESRLTNSLSRLRDVFKK 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,077,109
Number of Sequences: 27780
Number of extensions: 210722
Number of successful extensions: 367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)