Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F07
         (892 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   177   8e-45
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   176   1e-44
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   176   1e-44
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   9.6  

>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  177 bits (431), Expect = 8e-45
 Identities = 88/171 (51%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +1

Query: 139 LVPVKGPRGVLKRXFKHLAVXIRMVXP-----RLLKVXQWFGSKKXLAAVRTVCSHVXXM 303
           ++ V+GPRG L R FKHL +  +++       R LK+  WFGS+K  A++RT  SHV  +
Sbjct: 24  VIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDNL 83

Query: 304 IKGVTKGFQYKXRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 483
           I GVT+GF Y+ R VYAHFPIN      N  IEIRNFLGEK +R+V+M  GV +V S K 
Sbjct: 84  IAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKV 143

Query: 484 KDELIIEGNSLEDVSSSAALIQQSTTVXXXDIXKFLDGLYVSEKTTVVLDD 636
           KDE+I+EGN +E VS S ALI Q   V   DI KFLDG+YVSEK  + +++
Sbjct: 144 KDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194


>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  176 bits (429), Expect = 1e-44
 Identities = 86/171 (50%), Positives = 116/171 (67%), Gaps = 5/171 (2%)
 Frame = +1

Query: 139 LVPVKGPRGVLKRXFKHLAVXIRMVXP-----RLLKVXQWFGSKKXLAAVRTVCSHVXXM 303
           ++ V+GPRG L R FKHL +  +++       + LK+  WFG++K  A++RT  SHV  +
Sbjct: 24  VIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNL 83

Query: 304 IKGVTKGFQYKXRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 483
           I GVT+GF+YK R VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K 
Sbjct: 84  ISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKV 143

Query: 484 KDELIIEGNSLEDVSSSAALIQQSTTVXXXDIXKFLDGLYVSEKTTVVLDD 636
           KDE++++GN +E VS S ALI Q   V   DI KFLDG+YVSEK+ +V ++
Sbjct: 144 KDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  176 bits (429), Expect = 1e-44
 Identities = 86/171 (50%), Positives = 116/171 (67%), Gaps = 5/171 (2%)
 Frame = +1

Query: 139 LVPVKGPRGVLKRXFKHLAVXIRMVXP-----RLLKVXQWFGSKKXLAAVRTVCSHVXXM 303
           ++ V+GPRG L R FKHL +  +++       + LK+  WFG++K  A++RT  SHV  +
Sbjct: 24  VIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNL 83

Query: 304 IKGVTKGFQYKXRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 483
           I GVT+GF+YK R VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K 
Sbjct: 84  ISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKV 143

Query: 484 KDELIIEGNSLEDVSSSAALIQQSTTVXXXDIXKFLDGLYVSEKTTVVLDD 636
           KDE++++GN +E VS S ALI Q   V   DI KFLDG+YVSEK+ +V ++
Sbjct: 144 KDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 506 PSMISS-SFCFGELTTVTPGAI 444
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,360,022
Number of Sequences: 28952
Number of extensions: 191159
Number of successful extensions: 358
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)