Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_F05
(1082 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.057
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 32 0.70
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 32 0.70
SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19) 31 1.2
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.6
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 29 8.6
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 8.6
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 35.9 bits (79), Expect = 0.057
Identities = 29/120 (24%), Positives = 31/120 (25%)
Frame = +1
Query: 667 SPRPPRAGIXXXXIXPSPAXTXXTNPTXXXXXNQPLXXPLPXPPXXPXLXXXXXXVQXXA 846
SP PP P P NP N P P P PP P A
Sbjct: 89 SPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPP-PNPPYPPP-PNAPYPPSPNA 146
Query: 847 PHXPXXHXXKPSPXXXXXXXPSTNLPXLPQXPXTPPXXXXPXTRRXPXXSPNPTXXTXXP 1026
P+ P + P P P P P PP P P P P
Sbjct: 147 PYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPP 206
Score = 32.3 bits (70), Expect = 0.70
Identities = 31/113 (27%), Positives = 37/113 (32%), Gaps = 1/113 (0%)
Frame = +1
Query: 670 PRPPRAGIXXXXIXPSPAXTXXTNPTXXXXXNQPLXXPLPXPPXXPXLXXXXXXVQXX-A 846
P PP A P+P N N P P P PP P L A
Sbjct: 117 PPPPNAPYPPP---PNPPYPPPPNAPYPPSPNAPYPPP-PNPPYPPPLYPPPPNPPPPNA 172
Query: 847 PHXPXXHXXKPSPXXXXXXXPSTNLPXLPQXPXTPPXXXXPXTRRXPXXSPNP 1005
P+ P + P+P P+ P P P PP P P +PNP
Sbjct: 173 PYPPPPYPPPPNP--PYPPPPNPPYPPPPNAP-NPPPPNPPYP--PPPNAPNP 220
Score = 30.7 bits (66), Expect = 2.1
Identities = 21/93 (22%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Frame = +3
Query: 606 PPXRLPRNPXXDXPXXXXXXXPTPAPX----GDXXXPHSTLPRXNXXXKPXXXXXXEPTA 773
PP P P + P P P P + P++ P P P
Sbjct: 134 PPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNP 193
Query: 774 XIXPXPTAXXSXAXXPXXXRPTXGPSPXXXPXP 872
P P A P P P+P P P
Sbjct: 194 PYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPP 226
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 32.3 bits (70), Expect = 0.70
Identities = 22/78 (28%), Positives = 25/78 (32%)
Frame = +2
Query: 653 RXXSXPHARPXRGSXAXXFXPPPXXQXXQTXPXPAXXTNRSYXPXPXRRPVXRSXPXXSP 832
R P P RG PPP + P PA + P P R P P P
Sbjct: 211 RSSGPPPPPPGRGPSQRSLAPPPTGS---SRPLPAPPPGENRPPPPMRGPTSGGEP-PPP 266
Query: 833 SNXXPLTXXXXTPXNPPP 886
N P + PPP
Sbjct: 267 KNAPPPPKRGSSNPPPPP 284
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/58 (27%), Positives = 20/58 (34%)
Frame = +2
Query: 713 PPPXXQXXQTXPXPAXXTNRSYXPXPXRRPVXRSXPXXSPSNXXPLTXXXXTPXNPPP 886
PPP + P P ++ P P R P RS + PL PPP
Sbjct: 195 PPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPP 252
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 32.3 bits (70), Expect = 0.70
Identities = 22/78 (28%), Positives = 25/78 (32%)
Frame = +2
Query: 653 RXXSXPHARPXRGSXAXXFXPPPXXQXXQTXPXPAXXTNRSYXPXPXRRPVXRSXPXXSP 832
R P P RG PPP + P PA + P P R P P P
Sbjct: 123 RSSGPPPPPPGRGPSQRSLAPPPTGS---SRPLPAPPPGENRPPPPMRGPTSGGEP-PPP 178
Query: 833 SNXXPLTXXXXTPXNPPP 886
N P + PPP
Sbjct: 179 KNAPPPPKRGSSNPPPPP 196
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/58 (27%), Positives = 20/58 (34%)
Frame = +2
Query: 713 PPPXXQXXQTXPXPAXXTNRSYXPXPXRRPVXRSXPXXSPSNXXPLTXXXXTPXNPPP 886
PPP + P P ++ P P R P RS + PL PPP
Sbjct: 107 PPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPP 164
>SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)
Length = 86
Score = 31.5 bits (68), Expect = 1.2
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 874 KPSPXXXXXXXPSTNLPXLPQXPXTPPXXXXPXTRRXPXXSPNPT 1008
+P+P P TN+P P P TPP P + P P T
Sbjct: 24 QPTPPKPDTPPPGTNIP-TPPSPNTPPPVTQPPVTQPPVTQPPVT 67
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/80 (27%), Positives = 25/80 (31%)
Frame = +1
Query: 769 PLXXPLPXPPXXPXLXXXXXXVQXXAPHXPXXHXXKPSPXXXXXXXPSTNLPXLPQXPXT 948
P PLP PP P V P P +P+P PST+ P P
Sbjct: 1036 PSAQPLP-PPRKPS--PPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPRQPD 1092
Query: 949 PPXXXXPXTRRXPXXSPNPT 1008
P P P PT
Sbjct: 1093 PIPTNPAHPTEPPPRQPKPT 1112
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.7 bits (61), Expect = 8.6
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = +2
Query: 713 PPPXXQXXQTXPXPAXXTNRSYXPXPXRRPVXRSXPXXSPSNXXPLTXXXXTPXNPPP 886
PPP P P + P P PV +S SP+ T PPP
Sbjct: 686 PPPPPPPPPPPPPPPPQPSTPPPPPPSTPPVQQSGAPGSPAGSPSGTSAGNPQQQPPP 743
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 28.7 bits (61), Expect = 8.6
Identities = 29/128 (22%), Positives = 36/128 (28%), Gaps = 3/128 (2%)
Frame = +1
Query: 670 PRPPRAGIXXXXIXP-SPAXTXXTNPTXXXXXNQPLXXPLPXPPXXPXLXXXXXXVQXXA 846
P P +A P +P NP P P P P P +
Sbjct: 234 PNPSKAIATPNPPMPETPLPPATPNPFIPPASPNPSIPPAPPNPSIPAPPNPSIPLAPPN 293
Query: 847 PHXPXX--HXXKPSPXXXXXXXPSTNLPXLPQXPXTPPXXXXPXTRRXPXXSPNPTXXTX 1020
P+ P + PS P+ P P P PP P P P P +
Sbjct: 294 PYIPPAPPNLFIPSAPPNPHIPPA---PPNPYIPTAPPNPSIPPAPPNPSIPPAPPNPSI 350
Query: 1021 XPAXSXXF 1044
PA F
Sbjct: 351 PPAPPNLF 358
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/70 (25%), Positives = 18/70 (25%)
Frame = +1
Query: 769 PLXXPLPXPPXXPXLXXXXXXVQXXAPHXPXXHXXKPSPXXXXXXXPSTNLPXLPQXPXT 948
P P P PP P P P P P P P P P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Query: 949 PPXXXXPXTR 978
PP P R
Sbjct: 426 PPPPPPPALR 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,512,099
Number of Sequences: 59808
Number of extensions: 120200
Number of successful extensions: 428
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3284497861
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -