Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F04
         (903 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)     108   5e-24
SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)          31   1.7  
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        30   2.2  
SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)                    30   2.2  
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              29   6.8  

>SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)
          Length = 270

 Score =  108 bits (260), Expect = 5e-24
 Identities = 69/189 (36%), Positives = 102/189 (53%)
 Frame = +3

Query: 216 MGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVV 395
           MG  MA NL+ +G+ V  +D   ++++   + G   A +              + +NK+V
Sbjct: 1   MGSPMAKNLLDQGYGVVVHDIFPESVDDLRQLGAGVAET---------PDEVAMKTNKIV 51

Query: 396 LDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNA 575
               L    V    + G+LLID STIDP + K+I  +A EKG  + DAPVSGG+  A+  
Sbjct: 52  --TMLPSSSV----QDGTLLIDCSTIDPALSKEISEMASEKGATYLDAPVSGGITAAKAG 105

Query: 576 TLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAXLTNNMLMGITGMATAXCMNM 755
           TL FM GG++E FE++  +L  MG    H G  G+GQ A + NNML+ ++ + TA  MN+
Sbjct: 106 TLTFMVGGKEEGFEQAKDVLMSMGKNVIHTGPNGTGQAAKICNNMLLAVSMIGTAEAMNL 165

Query: 756 GHXNGTRTE 782
           G   G   E
Sbjct: 166 GIRLGLDAE 174


>SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 35/128 (27%), Positives = 61/128 (47%)
 Frame = +3

Query: 171 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXX 350
           +S + + V  +G GN+G  +A  L K   +V+ +D  ++  N     G T  NS      
Sbjct: 3   TSASPRTVGLVGTGNVGSAVAVGLRKIDVSVKAFDLQQNNYNFLESTGTTLVNSPEEVTK 62

Query: 351 XXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGF 530
                 + L   + V    L   G+++  K+GS+ ID +T D N   ++  +A  KG+  
Sbjct: 63  DVDVLITALPKPQHVKSA-LEDTGMLSMLKEGSVWIDHTTTDYNETIRLGELATSKGVHA 121

Query: 531 TDAPVSGG 554
            +AP++GG
Sbjct: 122 VEAPLTGG 129


>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
          Length = 401

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 186 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKN 311
           K +A +GLG +G  +A  +   G    GYDP     +AA  N
Sbjct: 9   KTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESN 50


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +3

Query: 438 KKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFE 617
           + G ++ID    +     +      E+GL F  + VSGG  GA+    + M GG ++ + 
Sbjct: 139 ESGDIIIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYGP-SLMPGGSEKAWP 197

Query: 618 RSLPLLKVMGAK 653
              P+ + + AK
Sbjct: 198 HIKPIFQAIAAK 209


>SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = +1

Query: 193 WLSSASETWEDSWLRTWLKRVSQFAATILPKMH 291
           W+    + W D W+  W+  +    A + P +H
Sbjct: 28  WMDGWMDGWMDGWMDGWMDVIDVLCAVLFPDLH 60


>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
          Length = 344

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 459 DSSTIDPNVPKQIFPI-ALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLL 635
           ++ +  P    Q F I  L      +  P+SGGV G  +AT +  + G+K   + ++  L
Sbjct: 263 ETKSFAPPTTAQSFAIPGLSNAASTSKQPISGGVGGTSSATSSGASTGQKSSMQSAMKRL 322

Query: 636 KVMGAK 653
           +++  K
Sbjct: 323 QMVKKK 328


>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 506 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 360
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 250 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 298


>SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 109 KWPRAQY*ALSVCTQPPDGRIVLTPTRMWLSSASETW 219
           KW   Q    S+C + P+ +I  +  R +LS++S+ W
Sbjct: 3   KWSGNQVLGQSLCLRGPEQKIASSCVRAFLSTSSDDW 39


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 506 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 360
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 306 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 354



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 506 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 360
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 698 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 746


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,310,419
Number of Sequences: 59808
Number of extensions: 640879
Number of successful extensions: 1752
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)